Cfla003379.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424435.1:35460593-35466888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.2 1.4e+02 4.3 2.9 2 23 176 197 175 197 0.94 2 16 3.4e-06 0.00022 22.6 4.7 1 23 202 224 202 224 0.98 3 16 9.7e-05 0.0062 18.0 5.0 1 23 230 252 230 252 0.97 4 16 0.0013 0.084 14.5 0.9 3 21 260 278 258 279 0.94 5 16 6.1e-05 0.0039 18.6 0.6 1 23 286 308 286 308 0.97 6 16 0.002 0.13 13.9 0.0 1 23 472 494 472 494 0.95 7 16 1.4e-05 0.0009 20.7 5.8 1 23 500 522 500 522 0.96 8 16 8.8e-05 0.0056 18.2 7.7 1 23 528 550 528 550 0.98 9 16 0.00078 0.05 15.2 0.3 2 23 557 579 556 579 0.93 10 16 0.0053 0.34 12.5 0.5 1 23 591 613 591 613 0.97 11 16 0.012 0.79 11.4 4.6 1 23 619 641 619 641 0.97 12 16 4e-06 0.00025 22.4 0.5 1 23 648 670 648 670 0.96 13 16 5.1e-06 0.00032 22.1 1.2 1 23 676 698 676 698 0.98 14 16 7.5e-07 4.8e-05 24.7 0.9 3 23 706 726 704 726 0.96 15 16 0.00018 0.011 17.2 0.1 1 23 732 754 732 754 0.98 16 16 0.1 6.5 8.5 0.7 1 23 759 782 759 782 0.97
Sequence Information
- Coding Sequence
- atggaaagttttgaatttgattttcatAATATATGTCGATTGTGCAAAAGCACATCGGAATCTATGCGATCTTTATTCGAAACTTACGATAAAAATGCAGCTTGTCCCCGCTTTGACGAGATGCTAATGGCCTGTACGGCAGTTTCggtaaATCTAGGAGATAATTTGCCGGATCAGATTTGTCAAACTTGCATTGATAATTTACATATTTCCTATAATTTCAAACAACAATGCGAAAACACCGATGTTTCCCTTCGCGagtatattaaaagttttaggAGCAGTGATAATATCAAAGAAGAACTTTATTTACAATCACAGGAACTAGCCGATAAGACCAACGATTCAGAAAATATCATTATCAACAATGTCGAAGAAATAGTCGACGATGAAGTAGCAAACGATCTACCTTCACAAGAATCAGAAGATTCTGTAATTGTGAAATCCGATCCAGATATTGAACTGAACGAAGATACTTCTAATATCGAttacattcaatttttggaaaataaccAAGTGCTGTTAACATGTCGTACCTGTGCAAAGAGCTTTACCACCGTGGAGGGCATGAAGTGTCACAAACGTGTACACACAGGAAGCCTCTTTAAATGTAAAGAATGTGGTAAAAAGTATACTCGACAAAATCATTTGCAACGTCATGAATTGTCTCACAGTCGTCGAAAAGTTCACGTTTGCAAAATCTGTAACAAAACTTTGACACGATTTGAACATCTTAGAAGGCATTTGATAACTCATTTGAAAGAGAAGCCTTTCGGTTGTACAACCTGCAATCGGGGTTTTAATAGAGCAGAACATCTGACAAATCACGTTAAAAGATGTAAAGGTATTCACGTGTACATTTGCGATATTTGTAACAAAGGATTTAATCGTGAAGACAGCTTGGAAGTTCATAAACATATTCACAACAACAAATTACCTGTTTTACCCAcacttgaaaatataaataatattgatcAACATTATGTTGAAATTGAGTGTGAAGGTATGCCTCAACTATCGGATTTATCTGAGAGTGAAACTGAAGCAGATGTTGGTGACAATTTTGAACCTGAAGTTATTACATCTGAAACTTATGACGATGCAACAAATGATACTTCACTAAtagAAAATATTGAGAATAGTGAAAATGCAGAAATATACGCCGAGATAGACCCTGCTGAAATAGAAGATGAAGGTAAAGATTTAGATGATGACTATTATGATGAAGATCTGGATTTAAAAGAAGAAAGGGACGACTCTGACAGTGGACAATCAGAATATTTACCAAAACCATCGTTGAAACGAAAACGTGGTCGTCCACGAAAATACAGCGTTTCTAAAACAAGTAAAACTCGTGGGCGCTCTtcactttcaaaaattaaaagtgaacCATCAGATGATATCGAAGGTGAATTTCCTTGTCCAGTTTGTAATGAAGTAttcattaaaatgaatttgCTTGAAAAACATGCATTGGAACATGACGGTTTGAAATTGCATGCATGTACCatatgtaacaaaaaattttcgcGTAATAATCATTTAAGAAGACACCTTTTGTCTCATTCCGAAGTAAAACCTTTTTCGTGCGAAAATTGCTTCAAGTGTTTCAACAGACGTGATCATCTGACTCAGCATATGAAATTACATTATAGATCCGAAGATCTTGAATGCGACATATGCAAGAAACCGTTTGGTCGTGAAGAACAGTTGCTTAAACACAAAGCTTCAAAGCATAACATTGGTGATAAAGTTGCAGGAGAGAAAAAATTCCAATGTCCTGTGTGCCTTAAAGGTTTTACAACCGAAAAATATCGTGATATTCACATGAAAGGTCACAATGGTGAAAAAACGTTTGAATGCAGAATTTGTCACAAGGCATTTCTCTCTAAATCACATCTATCTGAACACGTCAAGTTTCATAATGATcaatccaagaaatttttatGTTCAGAATGTGGTCAACGCTTTATAAGAAATGATTACTTGGTAATTCACATGAGAAGACATCGAGGTGAGAAACCTTTCAAATGTAAATATTGTGGAAAAGGTTTTCCTCGGACTACTGATTTAACAGTTCACGAAAGATACCACACCGGGGAAAAAACGCACTTGTGCACAATTTGTGGTCGTGGATTCGGAAGagCTTACAATTTAACTGTTCACATGAGAACTCACACTGGAGAGAAGCCTTATGCATGTACTTATTGCGATGCAGCTTTTGCACAAGGCAATGATCTTAAAGCTCACGTACGTCGTCACACTGGAGAAAGATTTCAATGTGAACTTTGTACAGAAAGTTTTTTGATGGGTTATTTGCTAACTCAACATAAGCGAACTGTACATGGTTTAAACGTTGTAAGTAACATAAGAAGACTTCAGCATGTAAAAACTGATGTAGCAAACGTAGATGACCCGCCAATTACTATTCCGTTACCTCCACCGGTTATTCCAGTTAATGCTATGAATGCTCAGTTGCAAGCTCAAATGGCAATACAACAGTTACAACAACAGATTAGTCGGCAGTGA
- Protein Sequence
- MESFEFDFHNICRLCKSTSESMRSLFETYDKNAACPRFDEMLMACTAVSVNLGDNLPDQICQTCIDNLHISYNFKQQCENTDVSLREYIKSFRSSDNIKEELYLQSQELADKTNDSENIIINNVEEIVDDEVANDLPSQESEDSVIVKSDPDIELNEDTSNIDYIQFLENNQVLLTCRTCAKSFTTVEGMKCHKRVHTGSLFKCKECGKKYTRQNHLQRHELSHSRRKVHVCKICNKTLTRFEHLRRHLITHLKEKPFGCTTCNRGFNRAEHLTNHVKRCKGIHVYICDICNKGFNREDSLEVHKHIHNNKLPVLPTLENINNIDQHYVEIECEGMPQLSDLSESETEADVGDNFEPEVITSETYDDATNDTSLIENIENSENAEIYAEIDPAEIEDEGKDLDDDYYDEDLDLKEERDDSDSGQSEYLPKPSLKRKRGRPRKYSVSKTSKTRGRSSLSKIKSEPSDDIEGEFPCPVCNEVFIKMNLLEKHALEHDGLKLHACTICNKKFSRNNHLRRHLLSHSEVKPFSCENCFKCFNRRDHLTQHMKLHYRSEDLECDICKKPFGREEQLLKHKASKHNIGDKVAGEKKFQCPVCLKGFTTEKYRDIHMKGHNGEKTFECRICHKAFLSKSHLSEHVKFHNDQSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYACTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQHVKTDVANVDDPPITIPLPPPVIPVNAMNAQLQAQMAIQQLQQQISRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270134;
- 90% Identity
- iTF_00272981; iTF_00271535; iTF_00270134; iTF_00927948;
- 80% Identity
- -