Lyun016944.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000035.1:672056-676968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.3 1.4e+02 4.4 2.8 2 23 180 201 179 201 0.94 2 16 7.8e-06 0.00083 20.9 4.5 1 23 206 228 206 228 0.98 3 16 6.4e-05 0.0068 18.0 5.0 1 23 234 256 234 256 0.97 4 16 0.00059 0.063 15.0 0.6 3 22 264 283 262 283 0.95 5 16 4e-05 0.0043 18.6 0.6 1 23 290 312 290 312 0.97 6 16 0.002 0.21 13.3 0.1 1 23 477 499 477 499 0.95 7 16 4e-05 0.0042 18.6 5.9 1 23 505 527 505 527 0.96 8 16 5.8e-05 0.0061 18.1 7.7 1 23 533 555 533 555 0.98 9 16 0.00031 0.033 15.8 0.2 2 23 562 584 561 584 0.93 10 16 0.0035 0.37 12.5 0.5 1 23 596 618 596 618 0.97 11 16 0.0064 0.68 11.7 5.6 1 23 624 646 624 646 0.97 12 16 2.6e-06 0.00028 22.4 0.5 1 23 653 675 653 675 0.96 13 16 3.3e-06 0.00035 22.0 1.2 1 23 681 703 681 703 0.98 14 16 4.9e-07 5.2e-05 24.7 0.9 3 23 711 731 709 731 0.96 15 16 0.00012 0.012 17.2 0.1 1 23 737 759 737 759 0.98 16 16 0.067 7.1 8.5 0.7 1 23 764 787 764 787 0.97
Sequence Information
- Coding Sequence
- ATGGaaacttttgaatttgattttcataATATATGTCGATTATGCAAAAGCACATCGGAATCTATGCGATCTTTATTCGAAACTTACGATAAAAATGCAGCTTGTCCCCGCTTTGACGAGATGCTAATGGCCTGTACGGCAGTTTCGgtAAATCTCGGAGATAACTTGCCACACCAGGTTTGTCAAATTTGCATtgataatttacatatttcttaCAATTTCAAGCAACAATGCGAAAACACTGATATTTCTCTTCGGGAGTATATTAAAAGCTTTAGGAGCAGCGGTAATATTAAGGAGGAACTTTATTTACAATCACAAGAACTAGCGGATAAGACCAATGATTCAGAAACTATCATTATTAACAATGTCGAAGAAATAGTCGACGATGTAATTAGCGAAGTAGCGAATGATATTCTACCATCACAAGAACCGGAAGAATCGATAATTGTGAAGTCTGATCCAGATACCGAAGGGCTCGAAGAAAATTCTAATATCGATTACatacaatttttggaaaataaccaAGTGGTGCTAACATGCCGTACCTGTGCGAAGAGCTTTTCCACCGTGGAGGGCATGAAATGTCACAAACGTGTCCACACAGGGAGCCTTTTTAAATGTAGAGAATGTGGTAAAAAGTATACCAGACAAAATCATTTGCAGCGCCATGAATTGTCACACAGTCGTCGAAAGGTTCACGTTTGTAAAATCTGTAACAAAACTTTGACACGATTTGAGCATCTTAGAAGGCATCTAATAACTCATTTGAAAGAGAAACCATTTGGTTGTACAACATGCAATCGTGGTTTTAATAGAGCAGAACATCTGGCAAATCACATTAAAAGATGTAAAGGTATTCACGTGTACATTTGCGATATTTGTAACAAGGGATTTAATCGGGAAGACAGCTTAGAGGTTCATAAACATATTCATAATAACAAATTACCCGTTTTACCTACActtgataatattaataacatcgATCAACATTATGTTGAAATTGAGTGCGAAGGAATGCCCGAACTCTCGGACTTATCTGAGAGCGAAGCTGAAGCTGATGGTGGTGACAATTTTGAATCTGAACTTATGACATCTGAGAATTGCGACGCCAATGCAACAAACGATACTTCACTAATAGaaaatattgaaaatagtgAAAATGCAGAAATTTACACAGAAATAGACTGTGCTGAAATTGAAGATGAAAATAAAGAGTTAGAAGATGAATTTTATGATGAAGATATTGATTTAAAAGAAGAAAGGGAAGACTCGGACAGTGGACAATCTGAATATTTACCAAAACCATCATTGAAACGAAAACGTGGTCGTCCACGAAAATACAGTGTTCCTAAATCAAGTAAATCCCGTGGACGTTCTTcactttctaaaattaaaagtgaaccAGCAGATGATATTGAGGGTGAATTTTCTTGTCCAGTTTGTAGTGAAGTCTTCAATAAAATGAATTTGCTTGAAAAACATGCCTTGGAACACGACGGTTTGAAGTTGCATGCATGTACCATATGTAACAAGAAATTTTCGCGTACTAATCATTTAAGAAGACACCTTTTGTCTCATTCCGAAGTAAAACCTTTCTCGTGCGAAAATTGCTTCAAGTGTTTTAACAGACGCGATCATCTAACTCAACATATGAAATTACATTATAGATCTGATGATCTCGAGTGTGATATATGCAAGAAACCATTTGGTCGTGAAGAACAGTTGATTAAACACAAAGCCTCAAAACATAACATTGGTGATAAAGTTGCAGGtgagaaaaaatttcaatgtccCGTGTGCCTTAAAGGTTTTACAACCGAAAAATATCGTGATATTCACATGAAAGGTCACAATGGTGAAAAAACATTTGAATGCAGAATTTGTCATAAATCGTTCCTCTCTAAATCACATTTATCTGAGCACGTGAAATTTCATAATGATCAATCCAAGAAATTTTTGTGTTCCGAATGTGGTCAGCGCTTTATAAGAAACGATTACTTGGTAATTCACATGCGAAGACATCGAGGGGAGAAAccgtttaaatgtaaatattgtgGAAAAGGTTTTCCTCGTACAACCGATTTAACAGTTCATGAAAGATATCACACTGGCGAAAAAACACACTTGTGCACAATTTGTGGCCGTGGATTTGGAAGaGCTTACAATTTAACTGTTCATATGAGAACTCACACGGGAGAGAAGCCCTATGCATGTACTTATTGTGATGCAGCTTTTGCACAAGGCAATGATCTTAAAGCTCACGTACGTCGTCACACTGGAGAAAGATTTCAATGCGAACTTTGTACAGAAAGCTTTTTAATGGGCTATTTGCTAACCCAACATAAGCGAACTGTACATGgttTGAATGTTGTAAGTAATATAAGAAGACTTCAGCATGTCAAAACTGATGTAGCAAATATAGATGACCCTCCAATTACTATTCCATTACCTCCACCGGTTATTCCAGTTAATGCCATGAATGCTCAGTTGCAAGCTCAAATGGCAATACAACAATTACAACAACAAATTAGTCGACAGTGA
- Protein Sequence
- METFEFDFHNICRLCKSTSESMRSLFETYDKNAACPRFDEMLMACTAVSVNLGDNLPHQVCQICIDNLHISYNFKQQCENTDISLREYIKSFRSSGNIKEELYLQSQELADKTNDSETIIINNVEEIVDDVISEVANDILPSQEPEESIIVKSDPDTEGLEENSNIDYIQFLENNQVVLTCRTCAKSFSTVEGMKCHKRVHTGSLFKCRECGKKYTRQNHLQRHELSHSRRKVHVCKICNKTLTRFEHLRRHLITHLKEKPFGCTTCNRGFNRAEHLANHIKRCKGIHVYICDICNKGFNREDSLEVHKHIHNNKLPVLPTLDNINNIDQHYVEIECEGMPELSDLSESEAEADGGDNFESELMTSENCDANATNDTSLIENIENSENAEIYTEIDCAEIEDENKELEDEFYDEDIDLKEEREDSDSGQSEYLPKPSLKRKRGRPRKYSVPKSSKSRGRSSLSKIKSEPADDIEGEFSCPVCSEVFNKMNLLEKHALEHDGLKLHACTICNKKFSRTNHLRRHLLSHSEVKPFSCENCFKCFNRRDHLTQHMKLHYRSDDLECDICKKPFGREEQLIKHKASKHNIGDKVAGEKKFQCPVCLKGFTTEKYRDIHMKGHNGEKTFECRICHKSFLSKSHLSEHVKFHNDQSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYACTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQHVKTDVANIDDPPITIPLPPPVIPVNAMNAQLQAQMAIQQLQQQISRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270134;
- 90% Identity
- iTF_00268811;
- 80% Identity
- -