Cnig005456.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:62696229-62701698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.3 1.2e+02 4.3 2.9 2 23 180 201 179 201 0.94 2 16 3.5e-06 0.00018 22.6 4.7 1 23 206 228 206 228 0.98 3 16 9.8e-05 0.0051 18.0 5.0 1 23 234 256 234 256 0.97 4 16 0.0013 0.07 14.5 0.9 3 21 264 282 262 283 0.94 5 16 6.2e-05 0.0032 18.6 0.6 1 23 290 312 290 312 0.97 6 16 0.0021 0.11 13.9 0.0 1 23 476 498 476 498 0.95 7 16 1.4e-05 0.00075 20.6 5.8 1 23 504 526 504 526 0.96 8 16 8.9e-05 0.0047 18.1 7.7 1 23 532 554 532 554 0.98 9 16 0.00079 0.042 15.2 0.3 2 23 561 583 560 583 0.93 10 16 0.0054 0.28 12.5 0.5 1 23 595 617 595 617 0.97 11 16 0.012 0.65 11.4 4.6 1 23 623 645 623 645 0.97 12 16 4e-06 0.00021 22.4 0.5 1 23 652 674 652 674 0.96 13 16 5.1e-06 0.00027 22.0 1.2 1 23 680 702 680 702 0.98 14 16 7.6e-07 4e-05 24.7 0.9 3 23 710 730 708 730 0.96 15 16 0.00018 0.0093 17.2 0.1 1 23 736 758 736 758 0.98 16 16 0.1 5.4 8.5 0.7 1 23 763 786 763 786 0.97
Sequence Information
- Coding Sequence
- ATGgaaagttttgaatttgattttcatAATATATGTCGATTGTGCAAAAGCACATCGGAATCTATGCGATCTTTATTCGAAACTTACGATAAAAATGCAGCTTGTCCCCGCTTTGACGAGATGCTAATGGCCTGTACGGCAGTTTCggtaaATCTAGGAGATAATTTGCCGGATCAGATTTGTCAAATTTGCATtgataatttacatatttccTATAATTTCAAGCAACAATGCGAAAACACGGATGTTTCCCTTCGCGagtatattaaaagttttaggAGCAGTGATAGTATCAAAGAAGAACTTTTTTTACAATCACAGGAACTAGCCGATAAGACCAACGATTCAGAAAATATCATTATCAACAATGTCGAAGAAATAGTCGACGATGTGAGTAGTGAAGTAGCAAACGATATCTTACCTTCACAAGAATCAGAAGATTCGGTAATTGTGAAATCCGATCCAGATATTGAACTGAATGAAGAAAATTCTAATATCGATTACAtacaatttttggaaaataaccAAGTGCTGTTAACATGTCGTACCTGTGCGAAGAGCTTTACCACTGTGGAGGGCATGAAGTGTCACAAACGTGTACACACAGGAAGCCTCTTTAAATGTAAAGAATGTGGTAAAAAGTATACTCGACAAAATCATTTGCAACGTCATGAATTGTCTCACAGTCGTCGAAAGGTTCACGTTTGCAAAATCTGTAACAAAACTTTGACACGATTTGAACATCTTAGAAGGCATTTGATAACTCATTTGAAAGAGAAGCCTTTTGGTTGTACAACATGCAATCGTGGTTTTAATAGAGCAGAACATTTGACAAATCACGTTAAAAGATGTAAAGGTATTCACGTGTACATTTGTGATATCTGTAACAAGGGATTTAATCGTGAAGACAGCTTGGAAGTTCATAAACATATTCACAACAACAAATTACCTGTTTTACCCAcacttgaaaatataaataatattgatcaACATTATGTTGAAATTGAGTGTGAAGGTATGCCTCAACTATCGGACTTATCTGAGAGTGAAACCGAACCAGATGTTGGTGACAATTTTGAACCTGAAGTTATTACATCTGAAACTTATGACGATGCTACAAATGATACTTCACTAatagAAAATATTGAGAATAGTGAAAATGCAGAAATATACGCCGAGATAGACCCTGCTGAAATAGAAGATGAAGGTAAAGATTTAGATGATGACTATTATGACGAAGATCTGGATTTAAAAGAAGAAAGGGACGACTCTGACAGTGGACAATCAGAGTATTTACCAAAACCATCGTTGAAACGAAAACGTGGTCGTCCACGAAAATACAGCGTTTCTAAAACAAGTAAAACTCGTGGGCGCTCttcactttcaaaaattaaaaatgaaccaTCAGATGATATCGAAGGTGAATTTCCTTGTCCAGTTTGTAATGAAGTATTCATTAAAATGAATTTGCTTGAAAAACATGCATTGGAACATGACGGTTTGAAATTACATGCATGTACCatatgtaacaaaaaattttcgcGTAATAATCATTTAAGAAGACACCTTTTGTCTCATTCCGAAGTAAAACCTTTTTCGTGCGAAAATTGCTTCAAGTGTTTCAACAGACGCGATCATCTGACTCAGCATatgaaattacattatagatCTGAAGATCTTGAATGCGACATATGCAAGAAACCGTTTGGTCGTGAAGAACAGTTGCTTAAACACAAAGCTTCAAAACATAACATTGGTGATAAAGTTGCAGGAGAGAAAAAATTCCAATGTCCTGTGTGCCTTAAAGGTTTTACAACCGAAAAGTATCGTGATATTCACATGAAAGGTCACAATGGTGAAAAAACGTTTGAATGCAGAATTTGTCACAAGGCGTTTCTCTCTAAATCACATCTATCTGAACACGTCAAGTTTCATAATGATCAATCCAAGAAATTTTTATGTTCAGAATGTGGTCAACGGTTTATAAGAAATGATTACTTGGTAATTCACATGAGAAGACATCGAGGTGAGAAACCTTTCAAATGTAAATATTGTGGAAAAGGTTTTCCTCGGACGACTGATTTAACAGTTCATGAAAGATACCACACTGGCGAAAAAACGCACTTGTGCACAATTTGTGGACGTGGATTCGGAAGagcTTACAATTTAACTGTTCACATGAGAACTCACACCGGAGAGAAGCCTTATGCATGTACTTATTGCGATGCAGCTTTTGCACAAGGCAATGATCTTAAAGCTCACGTACGTCGTCATACTGGAGAAAGATTTCAGTGTGAACTTTGTACAGAAAGTTTTTTGATGGGCTATTTGCTAACTCAACATAAGCGAACTGTACATGgCTTAAACGTTGTAAGTAACATAAGAAGACTTCAGCATGTAAAAACTGATGTAGCAAACGTAGATGACCCGCCAATTACTATTCCGTTACCTCCACCGGTTATTCCAGTTAATGCTATGAATGCTCAGTTGCAAGCTCAAATGGCAATACAACAGCTACAACAACAAATTAGTCGGCAGTGA
- Protein Sequence
- MESFEFDFHNICRLCKSTSESMRSLFETYDKNAACPRFDEMLMACTAVSVNLGDNLPDQICQICIDNLHISYNFKQQCENTDVSLREYIKSFRSSDSIKEELFLQSQELADKTNDSENIIINNVEEIVDDVSSEVANDILPSQESEDSVIVKSDPDIELNEENSNIDYIQFLENNQVLLTCRTCAKSFTTVEGMKCHKRVHTGSLFKCKECGKKYTRQNHLQRHELSHSRRKVHVCKICNKTLTRFEHLRRHLITHLKEKPFGCTTCNRGFNRAEHLTNHVKRCKGIHVYICDICNKGFNREDSLEVHKHIHNNKLPVLPTLENINNIDQHYVEIECEGMPQLSDLSESETEPDVGDNFEPEVITSETYDDATNDTSLIENIENSENAEIYAEIDPAEIEDEGKDLDDDYYDEDLDLKEERDDSDSGQSEYLPKPSLKRKRGRPRKYSVSKTSKTRGRSSLSKIKNEPSDDIEGEFPCPVCNEVFIKMNLLEKHALEHDGLKLHACTICNKKFSRNNHLRRHLLSHSEVKPFSCENCFKCFNRRDHLTQHMKLHYRSEDLECDICKKPFGREEQLLKHKASKHNIGDKVAGEKKFQCPVCLKGFTTEKYRDIHMKGHNGEKTFECRICHKAFLSKSHLSEHVKFHNDQSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYACTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQHVKTDVANVDDPPITIPLPPPVIPVNAMNAQLQAQMAIQQLQQQISRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270134;
- 90% Identity
- iTF_00268811;
- 80% Identity
- -