Ccap003645.1
Basic Information
- Insect
- Campoplex capitator
- Gene Symbol
- -
- Assembly
- GCA_037576405.1
- Location
- JARBWI010000004.1:9409504-9415623[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 1.3e-09 37.9 0.0 1 39 283 322 283 326 0.90 2 4 4.2e-12 4.1e-09 36.4 0.1 2 39 338 375 337 378 0.94 3 4 1.5e-18 1.5e-15 57.0 0.0 2 45 393 437 392 437 0.97 4 4 1.8e-18 1.8e-15 56.7 0.0 1 42 444 486 444 487 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGTTCGAACGATCAATCGGATATCtcgTTACTGAAAACGGCCGATCAATTGAAGATCAAGGGCCTCTGCGAAGTACCGGAAAGCAGAGAAGGTCCACCCTCTGTCAGTCTGAGCTCACCACCGCCCCGTGATTCTACGGCAACGAGGCTCAACTACACGAAATTAAAGAGGCATCATCCCCGTTATAAGAGACAAAGAACGAGCTTCGAGCCGCGAGAGACCAGTGCGGATTCACGTAACTACGACAAGTACAAAGAGGAGGAACACAACATCGAAGGCCTCGGCCGTGACAACAACAAAGAGaaTCACAGAGGTGACTGGCAGACGGAGGATGAGGAGTGCGGAGCGGATGCAGCATCAGTAGTCTTGGAATCCTGTCAACGTGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGTCTAGGTCATTACGGTCATCATCCCGATCCTGGTGAGGTAGACTTACCTCCGGAGACACAACCAACACCACCAAGCGCTACTCTCGTCGGTACCACGATAACGCATCTCCGCGATACCGATCATCACTCTACAGataTACAAAATTGTGACAGCGTTAAAATAAAGTTCGAAACTCTGCACACGATGGATTCGTCCGACACGATCGATATCGACAGCCACATGTCCGATCGTGCCAGCGTCAGCTCGAAACACGCCGCTGATAATGACAACATGATGATGATAACACCGGAACTTTTGGGCTTAATGCCATCCGGTAGCTCGGTACATTCGGACTCGGGTGAAAACAATTCACGAGGCGGTGGATCGGGCTCACATCATCACGGTTCCAAATCTTGGACTCAGGAAGACATGGACGCTGCGCTTGAGGCACTCAGAAATCATGACATGAGCCTCACGAAAGCATCAGCAACATTTGGAATACCCTCGACCACACTATGGCAAAGAGCTCACAGACTGGGAATCGACACACCGAAAAAAGATGGCCCAACGAAATCGTGGAGCGACGAGAGTCTGAACAACGCCCTTGAGGCATTGAGAACGGGGACGATATCGGCGAACAAAGCGTCAAAAGCATTCGGCATACCGTCCAGTACGCTTTACAAAATCGCGCGAAGAGAAGGTATTAGGCTTGCGGCTCCATTCAACGCTAGTCCGACGACGTGGTCACCGGCGGATCTCGACAGAGCACTCGAAGCTATTAGGTCCGGTCAGACATCGGTACAGAGAGCGTCGACGGAATTTGGTATTCCAACGGGTACATTGTACGGTAGATGCAAGAGAGAGGGCATAGAATTGAGCCGTAGCAATCCTACACCTTGGAGCGAGGACGCAATGACAGAGGCACTCGAGGCGGTCAGATTGGGTCACATGAGCATCAATCAAGCTGCTATACATTACAATCTACCTTACTCGTCTCTCTACGGGCGCTTCAAGAGGGGAAAGTACGAAGATCCAGTGGTGAGCGAGATGTCACAAGACGGCAGCAATCCTCACTTTCATTCGCATCAGAGTCCGCATCAAAATCACTCCTCGTCGCTACCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MESSNDQSDISLLKTADQLKIKGLCEVPESREGPPSVSLSSPPPRDSTATRLNYTKLKRHHPRYKRQRTSFEPRETSADSRNYDKYKEEEHNIEGLGRDNNKENHRGDWQTEDEECGADAASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGSNPHFHSHQSPHQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- iTF_00829635;