Cson004522.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- bab2
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000110.1:922105-942475[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-12 1.5e-09 37.6 0.0 1 39 386 425 386 429 0.90 2 4 4.9e-12 4.6e-09 36.0 0.1 2 39 441 478 440 481 0.94 3 4 1.8e-18 1.7e-15 56.7 0.0 2 45 496 540 495 540 0.97 4 4 2.1e-18 2e-15 56.4 0.0 1 42 547 589 547 590 0.97
Sequence Information
- Coding Sequence
- ATGCCACGATATTGGGGAGTTCATTACAGCGGAGGGATGGCCGGGCAGCATTACTGCCTGCGCTGGAACAACTACCAGTCAAATATGACGTCGGTTTTTCATCAGCTGCTACAAACAGAGGCCTTCGTCGACGTCACCCTGGCCTGCAACGAGGCTTCGTTAAAGGCGCACAAGGTCGTTTTGTCAGCTTGCAGTTCGTATTTCAAGAAGCTTTTGTTATCAAATCCTTGCAAACATCCGACGATAATAATGCCTCAGGACGTCTGTTTCAACGACCTGAAATTCATCATAGAGTTCGTCTACAAAGGAGAGATAGACGTGTCACAAGCTGAGCTTCAGTCGTTACTGAAAACGGCCGATCAGTTGAAGATCAAGGGCCTCTGCGAAGTTCCGGAGAGCAGAGAAGGTCCACCCTCAGTCAGTCTGAGCTCACCACCGCCCCGAGATTCAACGGCGACGAGGCTCAACTACACGAAATTAAAAAGGCATCATCCCCGTTACAAGAGACAAAGAACGAGCTTCGAGCCACGAGAGACCAGTGCGGATTCACGTAACTACGACAAGTACAAAGAGGAGGAGCACAACATCGAAGGCCTCGGCCGTGACAACAACAAAGAGAATCACAGAGGTGACTGGCAGACGGAGGATGAGGAGTGCGGAGCGGATGCAGCATCAGTAGTCTTGGAATCCTGTCAACGCGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGTCTAGGTCATTACGGTCATCATCCCGATCCTGGAGAGGTAGATTTACCCCCGGAGACACAACCAACACCTCCAAGCGCTACTCTCGTCGGTACCACGATAACGCATCTCCGCGATACCGATCATCATTCTACAGATATACAAAATTGCGACAGCGTTAAAATAAAATTCGAAACTCTGCACACGATGGATTCGTCCGACACGATCGATATCGACAGCCACATGTCCGACCGCGCCAGCGTTAGCTCGAAACATGCCGCTGATAATGACAACATGATGATGATAACACCGGAGCTTTTGGGTTTGATGCCTTCCGGCAGCTCGGTACATTCAGACTCTGGTGAAAACAATTCACGAGGCGGTGGTTCGGGTTCTCATCATCACGGTTCTAAATCTTGGACTCAAGAAGACATGGATGCTGCGCTCGAGGCACTCAGAAATCACGACATGAGCCTTACAAAAGCATCAGCAACATTTGGAATTCCCTCAACGACATTATGGCAAAGAGCTCACAGACTGGGAATCGACACACCAAAAAAAGATGGTCCGACGAAATCGTGGAGCGACGAGAGTCTGAATAACGCCCTTGAGGCATTAAGAACGGGGACGATATCGGCGAACAAAGCATCAAAAGCATTCGGCATACCGTCCAGTACGCTTTACAAAATCGCGCGAAGAGAAGGTATTAGGCTTGCGGCTCCATTCAACGCTAGTCCGACGACGTGGTCACCGGCCGATCTCGACAGAGCACTCGAAGCTATTAGATCCGGTCAGACATCGGTACAGAGAGCCTCGACGGAATTTGGTATTCCGACGGGTACATTGTACGGTAGATGCAAGAGAGAGGGCATAGAATTGAGCCGTAGCAATCCTACACCCTGGAGCGAGGACGCAATGACAGAGGCACTCGAGGCCGTCAGATTGGGTCACATGAGCATCAATCAAGCTGCTATACATTACAATCTACCTTACTCGTCTCTCTACGGGCGCTTCAAGAGGGGAAAGTACGAAGATCCGGTGGTGAGCGAGATGTCACAAGACGGCAGCAATCCTCACTTTCATTCGCATCAGAGTCCGCATCAAAATCACTCCTCGTCGCTACCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MPRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFKKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPPRDSTATRLNYTKLKRHHPRYKRQRTSFEPRETSADSRNYDKYKEEEHNIEGLGRDNNKENHRGDWQTEDEECGADAASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGSNPHFHSHQSPHQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- iTF_00829635;