Ccec012944.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_001625245.1
- Location
- LUGF01025660.1:26233-37304[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-75 7.2e-71 240.0 25.0 1 295 102 383 102 387 0.87 2 2 1 3.8e+04 -6.5 17.9 1 48 384 430 384 457 0.69
Sequence Information
- Coding Sequence
- ATGGGGAACAGATCGGAACTGGCCTCGCCCGAGAACAGCGAAGAGGAGAGCGGAGATGCCTTCACCGACGGCGACTTCGGTGACTCCGATGATGCCACCATCATAGAGCGCAGTCCCGAGTCCAAGCTGCCCGTCAACGAGACGGTGAATACTGGAGTCAAGACCGTCGAGAACGGGGCTGTGAACGGACATTCTGACTCGGAGAAGAACGATGATGCGTTTGAAGTGAACGACGTGGAGCGGAGAGACTCGCACAGCAGCACCAGCTCCATCGTCGGCATACTCGGGGACCAGCAGAACCATGCGGAGCAGCGGCTGGCGGCGCGGAGAGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCCTACGACATGTACGCCGAGACAGTGGGCCGGCGGGCGGGCGGGCGGCTGACGGCGCTGAGCCCCGGGGTGCTGCACTCCCCGCGCCGAAGCTCCGAGGACTCCGATGATGTGCTCAGCGTGAAGGACCTCAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAGGCGGCGCTCGCGTACCAGCTTGAGCTGCTGAAGGACCGCATCGAGGAACTGCACGAGGAGTTCGCGCAGCTGCAGAGAGAGCACCGCGAGAAGTGTTCCGCGCACGAGCGGCTGAAGCGCGAGCACGCGGCGACGGAGCGGGAGGTGACGCTGGCGCGGGACGCCGTGCGCGCGCGAGACtcggccgccgccgccgccgggtACACCTTCGTGGACGCTGCCGCCGTCCCGGACGTGGCCGGCAGCGGCGAGCAGCACGGTGCCGTGCCGCCGCTGGCGCTCGTCAGCCACGCCACGCAGCGCCTACTCGACGACGCCGGGGAGGGCACGCTCGATGTGCGGCTGCAAAACCTGGTGAGCTCGAAGCAGGCGCTGGAGAGCGAGCTGCGGAAACTCAAGCTGCAGCTCAACGAGGAGCGAGCGGCCCGGCAGAACGGCGCCGCCTCGCGCGTCGACCGCGACCACGAGACCGAGCTGGAGAGCTTGCGCAAGGCGGTGTCGGAGGCAAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCCCGGCTGGAGGCGCAGGTGGCGCGGCTGCGGGCGCGGCACGACCAGCAGGACGAGAGCGAGGAGCAGCTCAAGCAGGAGCGTCGGCGCCTGCAGAGAGAGGCCCGGGAGGCGCTGAACCGCGTGGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAGCGGCTCGACAAACTCAAGAACGCCAAGTCGCAGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGNRSELASPENSEEESGDAFTDGDFGDSDDATIIERSPESKLPVNETVNTGVKTVENGAVNGHSDSEKNDDAFEVNDVERRDSHSSTSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLTALSPGVLHSPRRSSEDSDDVLSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALAYQLELLKDRIEELHEEFAQLQREHREKCSAHERLKREHAATEREVTLARDAVRARDSAAAAAGYTFVDAAAVPDVAGSGEQHGAVPPLALVSHATQRLLDDAGEGTLDVRLQNLVSSKQALESELRKLKLQLNEERAARQNGAASRVDRDHETELESLRKAVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARHDQQDESEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSQLLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00687891;
- 90% Identity
- iTF_00687891;
- 80% Identity
- -