Cmac001890.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- MBD-R2
- Assembly
- GCA_900659725.1
- Location
- CAACVG010002203.1:1486574-1528453[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-11 4.6e-08 32.7 0.0 2 69 293 359 292 367 0.91 2 2 3.3 1.3e+04 -4.0 0.1 47 65 882 900 881 901 0.81
Sequence Information
- Coding Sequence
- CTTAAAATTTCTTCTACAGAAGAATCAACTGAGGAATCAAATCAGACAATAGAAGATGTTAAAATAAAACCCAAAGAGGAAAAACTAGATAACAAAGAGCAACCATCAACTGACCAGCTCTCTGCTGTGAATAATTCAGACTTGATTGACTTTACAATCAACAACCGGATTGAAGCATTAGACTTCAACCAGGAATGGTATCCAGCAAAAATCTTGGAGGTGGACCACCAAGAGAATGAAGTGCTGATCCATTTTGAAAAGTTCTCCAGTAAGTATGATGAATGGGTGAGCATGACAAGCTCAAGACTACGTCCAATGCAGCAGACCAATGAGACCATAGAACCTGTAATAACAGCTCCACCAGCAAGTATTAAGGTTGCTGGTACAACACATCAGTTTGAAGTTGGTGAGAGATGTTTGGCTGCTTGGAGCAACTCTCAGAAGTTCCCTGCAACTGTGTCTAAAGTTTTGGAGAATAACACATACGAAGTCCTGTTTGATGACGGCTTCGTAAAGACATTGAAGGGACACCGGATGTCGAAGACGGGCAGCAAGCCTTTGCAAGCGTCGCCGTTGTTTGAGCCGATTAAGAGTAGCAAGCAGGATCGCAgggaaaagaagaagaagctgaACGTAGCGTCGCTGTTCAAGAAACGACAGCGTGGCACCGGTGGCAGTGGAAGTGGAGGGGAAGCCAGTGCCGAAGGAGAGAAACCCACCAAGAAGGTTAGGCACAAGGCTGAGCCTTCGACCTTGGCTACTATACCCGCAGCCGCCGATACTGCTGTCGATGATGTACAGAACTGGAGGCCtttGTGGCACAAAGGCAGACCTGTTGGTACTGATGCAATGCTAGAGACAGGCGACGGACTGAAGCACACTGTCATTGTGCCTGATCCGCGGCTTCCAGAAGGCTGGGCGAAGCATTTGCTGCGTAGGAATATTAagggaggtggcgtcaaatgGGACACCATAATTACCAGTCCTGAAAATAGAAGATTCAGATCGAAGCACGAAGTGCGCGTCTTCTTAGAAGCCAACCCGACAGAAGGTCTGAACGTGAACATGTTTGATTTCTGTCTGGTCAGATCTAAGCCCAAAAAAGTCAAACAACCACCCGTAGAGACACCTGAAATGCCTCCTGAACCGGCACCTGTCGTAGAGCCGCAAGATGATTCGCAGATGATAGAAGAGCAAGACTCCCAAGATGAAGATAACTCTAATAGTCTGAAGATCCTATTTGAAGACAATGCATATAAGTGCCCCATTGAAGGGTGTGGTAAGAACTTCCGCAGGGAGAACCTAGCACAGATGCATGTTAAGCACTACCATCCAGAATACACCAAGTTCCTTGATTCTACGCCTAACGTAGCAGATTTAGCTTATGCTAGGACAGTTGGGGAAAATCTCGACAAATCGCCAGGTCCGTCAAGTAGACCTCCGGTATTGAAACCAGCTGTGAAGGCATCAACACCAAAGGCGTCAAAGTTGACTCAATCTCCACACTCAGAGATGGCGGATTTGAGACCAGCTGGCGCTCAGTCGCCCAGTATAAGCAAGTCCAAGGATGCCGAAATCATAAAGTTATTGAATTCGAAACCATCTGACAAAAAGGAGTCGGATATGACACAGAGCCATTCTCTTGGGATACCGCCAGGCGGATATCCAGACTTGAAGTTGAAGGATCTGCTGAGCAAGTCTGAAGGTGTACCGAAAAGGGACGAATTCAGCAAGTCGTTTGCTGCTAGTCGACCTGCTGGCATCAAGACCTTGCTTCCTGTTGCCAGGCAGCAAGCCGGTGATTCTGCTATGAGCCAACAACAGCAACAGCAGCAGCCCTCGCCGGACCTCCCACCCGCGACCGGCAAACGTAAACGCGTCACCTCCGACAACGCAGATCATACCGGCGCCAGGAGCAAACATCCCCGTTCCACTCCCCCGCCCTCCCAAACAACCGAGCAGCCCCCCTCCTCGCTGTCCCCCGCCTCCGTCCAACATCCGATTCCTGTCACCGGCGACAACTCTGTCGATCCGCTCCCTACCGCCCAACCCGCGACGGCCGCTCCCCTCCCCGAGGATCCTCCCGACTCCTCCAAACCCGACCTTCCCCCTAACAATATCATCATTGAAGGTGGCGAGGTGATCAAGATCGTCCGCATGAAGCAGGAGGAGATCATCAACTGCACGTGCGGCTACACCGAGGAGGACGGACTTATGATACAGTGCGAGCTGTGTCTCTGCTGGCAGCACGCTTATTGCAATAATATCGAGAGGGAGAGTCAGGTACCTGAGAAGTATATATGTTACATCTGCCAAAATCCGTTCAGAGAGCGACTGTCTCGCAAGTACTATCATGATCAGGATTGGTTGAAGCAGGGCATTCTTCCAACCGGTAGCTACCACTCCAGAGATGAAGAACAGTTACAGAAACGatttgaaaagctaaaaaaGTGCCATGATTTATCTGGCGGTTTGCAGGAACTCAAAGATTACATGCACAGCCTCGCAATCAAGCTCAAGATTGCTGAAATGAAGAATCATCCAAAATTGTACCTGTGGGCGAAAATGTGGGAGAAGAATTCGCTTCCCGAAAAAGTGAAAGAAGAATGCGATGAAACTAAGCACAAAATagaaaacatagaaaacgaaGATCATCAATACATAAAAACGAATGACCCCGAAAAACAAGAGAAACCCGACGATGCTATGCTAATGATGATTCTTAAAGCGGGAAAAGAGGTGATGCCAAAGTTAGATCTGAATTTGCTGATGGATAACAACATGAGCCAGCTCCCCATCATCCCTCAACCAGAGGCTGCGATCGACTCGAGCGTCTGTAGGGATAACCTGCTTCACCACATCCGCCACCAGGAGTCTCTAGTCGAGGAGagGTTGGATGACTTCGAGAAACAAATAGACGCATTGGAGGAGTGTATGGACATGGAGGTGGATATgaactatcccaaaatgagGCACTCCTTGCAGATGCTCGCCAGGGACCTGGAGAAGTTGAAAGAGTTCAGTCACACCACTACCATATGA
- Protein Sequence
- LKISSTEESTEESNQTIEDVKIKPKEEKLDNKEQPSTDQLSAVNNSDLIDFTINNRIEALDFNQEWYPAKILEVDHQENEVLIHFEKFSSKYDEWVSMTSSRLRPMQQTNETIEPVITAPPASIKVAGTTHQFEVGERCLAAWSNSQKFPATVSKVLENNTYEVLFDDGFVKTLKGHRMSKTGSKPLQASPLFEPIKSSKQDRREKKKKLNVASLFKKRQRGTGGSGSGGEASAEGEKPTKKVRHKAEPSTLATIPAAADTAVDDVQNWRPLWHKGRPVGTDAMLETGDGLKHTVIVPDPRLPEGWAKHLLRRNIKGGGVKWDTIITSPENRRFRSKHEVRVFLEANPTEGLNVNMFDFCLVRSKPKKVKQPPVETPEMPPEPAPVVEPQDDSQMIEEQDSQDEDNSNSLKILFEDNAYKCPIEGCGKNFRRENLAQMHVKHYHPEYTKFLDSTPNVADLAYARTVGENLDKSPGPSSRPPVLKPAVKASTPKASKLTQSPHSEMADLRPAGAQSPSISKSKDAEIIKLLNSKPSDKKESDMTQSHSLGIPPGGYPDLKLKDLLSKSEGVPKRDEFSKSFAASRPAGIKTLLPVARQQAGDSAMSQQQQQQQPSPDLPPATGKRKRVTSDNADHTGARSKHPRSTPPPSQTTEQPPSSLSPASVQHPIPVTGDNSVDPLPTAQPATAAPLPEDPPDSSKPDLPPNNIIIEGGEVIKIVRMKQEEIINCTCGYTEEDGLMIQCELCLCWQHAYCNNIERESQVPEKYICYICQNPFRERLSRKYYHDQDWLKQGILPTGSYHSRDEEQLQKRFEKLKKCHDLSGGLQELKDYMHSLAIKLKIAEMKNHPKLYLWAKMWEKNSLPEKVKEECDETKHKIENIENEDHQYIKTNDPEKQEKPDDAMLMMILKAGKEVMPKLDLNLLMDNNMSQLPIIPQPEAAIDSSVCRDNLLHHIRHQESLVEERLDDFEKQIDALEECMDMEVDMNYPKMRHSLQMLARDLEKLKEFSHTTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249015; iTF_00248962;
- 90% Identity
- -
- 80% Identity
- -