Bsil007275.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949316355.1
- Location
- OX438532.1:14076046-14086371[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-12 9.3e-09 35.0 0.1 3 69 413 478 411 486 0.90 2 2 3.5 1.4e+04 -4.1 0.1 46 61 986 999 983 1006 0.76
Sequence Information
- Coding Sequence
- ATGGGGCGGAAATGCAGTGTAGAAAGCTGTCTGTCCGACTCCAACAGACCTGAAGACATGGGGGTAACATTTCATAAGGTACCGATGCACCCTGACGTAAGACCGAAATGGATGTCTTTGTGCCATATACCGGACGATAAAAAGACCGTCAAGATAATCTATGTTTGCTCAAGGCATTTCTTGCGCGCGGACTTTTGTAATTTCAAAGGAAAGAAGTACATGCTGAGACAAGGAGTGCTACCTAGTGTCTTTCCTTGGGATAAGTCGAGACTCGAGGCTATCAAAGCCGAAGCTACAGTCAAGAAGGAGAAAAACATGGATGAACCAAACGCGGATGTGATGAAGGGCGAGTTGGAGGAGTCTACTTTGGATATCAAGTCCGAAGAATCTACTGAGGAATCAAATCAAACAATAGAAGATGTAAAAGGAGAGCCCAAACAGGAAAAACTGGAAGATAAACAACAACCACCTGGAGATCAACCATCTGCCATAAATAATTCAGACTTGATTGATTTCACAATCAACAACCGAATTGAAGCTTTGGACTTCAACCAAGAATGGTATCCAGCAAAAATTTTGGAAGTAGACCATCAGGAGAATGAAGTACTGATCCATTTTGAGAAGTTCTCGAGCAAGTATGATGAATGGGTGAGTATGGAAAGCTCAAGGTTGCGTCCGATGCAGCAAACCGCAGTACCTGAAACAACAGCTTCACCAGTGGGGAGGAAAGTTACTGGTATGACAGATATGTTTGAAGTAGGCGAGAGATGTCTGGCTGCCTGGAGCAACTCCCAGAAATTCCCTGCAACTGTGTCCAAGGTGTTGGAGAATAACACATACGAGGTCCTGTTCGACGACGGTTTCGTAAAGACCTTGAAGGGTCACCGGATGTCGAAGTCGGGCAGCAAGCCGTTGCAGGCGTCGCCACTGTTCGAACCGATCAAGAGTAGCAAGCAGGACCGTagggagaagaagaagaagttgaaCGTAGCGTCGTTGTTCAAGAAGCGGCACCGCGCCAGTGCTGGCGGCGGCAACGCCAGTGGCGGAGAAGCGGCCGAAGGGGAGAAGCCTACCAAGAAAGTGAAACACAAGGCAGATGCTTCACTCAATGCTGGTGCCGCTTTAGCCCCAGATACTTCTGCGGACGATATCCAGAATTGGAGGCCGTTATGGCACAAGGGCAAACCTGTCGGTACGGATGCAATGCTGGAGACAAGCGACGGTCTGAGACACACCGTCATCGTACCTGATCCGCGGCTCCCTGAAGGCTGGGCCAAACATTTGCTGCGCAGAAGTGTCAAAGGGGGCGGCGTTAAATGGGAAACGTACATTGTCAGTCCTGAAAATAGAAGATTCAGATCGAAATACGAAGTCCGCGTCTACTTGGAAGCCAATCCGACAAAAGGGGTGAATGTGAACATGTTCGACTTCTGTCTGGTCAAATCTAAGCCCAAGAAAACCAAAAAACCACCCGTTGAAATACCCGAACTGCCTCCTGCACCTCTACCTGTTTTGGAGTCGCAAGATGATTCACAGATGACAGAAGAGCAAGACTCTCAAGACGAAGACAACTCAAACAGCTTGAAGATACTGTTCGAAGACAACGCATATAAGTGTCCGATTGAAGGGTGCGGCAAGAACTTTCGCAGGGAGAACCTGGCCCAGATGCACGTGAAACATTATCACCCGGAGTACACAAAGTTCCTCGATTCCACTCCCAACGTGGCTGATCTAGCTTACGCCAGGACAGTGGGAGAGAATCTCGACAAATCTCCAGgtcCGTCAAGTAGACCACCGGGGTTGAAACCAGCTGTGAAGGCATCAACACCAAAGACGTCAAAGTTGGCCCAGTCTCCCCATCCAGAGATGCCGGATTTGAGACCGATGGGTGCTCAATCGCCTGGTATAAGCAAATGCAAGGATGCCGAAATTATAAAGTTATTGAACTCGAAACCGCCCGACAAAACCGAATCAGATTCAGCACAGggAATTCCGTCGGGTATCTCACCAGGCGGTTATCCAGATATGAGACTGAAGGACCTGTTAAACAAGTCTGAAGATGTACCGAAGAAGGACACATTCAGTAAGTCATTTGCGGTTAGTCGACCTGCTGGTATCAAGACATTGCTGCCTGTCGTGAGACAACAAGCAGTAGATCCATCTCAGAGCCAGCAGCAGCAGTCTCCTTCTGATCCCCCATCCGCGACGGGCAAACGCAAACGCGTCGCTTCCGAGATCTCCGAGCACGCCACCAGGAGCAAACAGCACCGTGCCACCACTCCACCTCCCTCCCAAACTTCCGAACAGCACCCCTCCCCAACTCCCTCCGTATCCCAACCTCCCATCCCGGTTACCGGCGATTCTCCGCTCCCCGCCGCCCAACCTACGCCCCCTCCCACAGGAGACCTTCCCCCCTCCCAACCTGACCCTCCTAACAATATCATCATTGAAGGTGGCGAGGTGATCAAGATCGTCCGCATGAAACAGGAGGAGATAATCAACTGCACCTGCGGCTACACGGAGGAGGACGGTCTTATGATACAGTGCGAGCTGTGCCTGTGCTGGCAGCACGCTTATTGCAACAATATCGAGAGGGAAAGTCAGGTACCGGAGAAGTACGTGTGCTACATCTGTCAGAACCCGTTCAGAGAGCGACTGTCCCGCAAATACTACCACGATCAGGACTGGCTGAAACAGGGCATACTACCAACCGGTAGTTACCACTCCAGAGACGAAGAACAGCTTCAGAAACGGTTCGAGAAGCTGAAAAAGTGCCATGATCTATCCGGCGGTTTGCAGGAACTGAAAGATTACATGCACAGCCTTGCCATCAAACTTAAGATTGCTGAAATGAAAAATCACCCGAAACTGTACCTGTGGGCCAAAATGTGGGAGAAGAATTCGCTTCCCGAAAAAGTAAAAGAGGAGTGCAACGAAACTAAGCATAAGATCGAAAACGAAGATCATCAGTATATAAAAACGAATGAAGATTcggaaaaacaagaaaaacccGACGATTCCATGCTGATGATGATCCTAAAAGCGGGGAAGGAGGTGATGCCAAAGTTGGACCTGAATTTGCTGATGGACAATAATATGAGTCAGTTGCCAATCATTCCTCAACCAGAAGCTGCTATAGATTCAACCGTGTGCAGGGACAACTTGCTTCACCACATTCGTCACCAGGAATCGCTGGTCGAAGAGAGGTTGGACGACTTCGAGAAACAGATCGACGCATTGGAGGAATGCATGGATATGGAGGTCGATATGAACTATCCTAAAATGAGACATTCTTTGCAGATGCTCGCCAGAGACCTTGAAAAGCTGAAAGAGTTCAGTCATACCACCACTATATGA
- Protein Sequence
- MGRKCSVESCLSDSNRPEDMGVTFHKVPMHPDVRPKWMSLCHIPDDKKTVKIIYVCSRHFLRADFCNFKGKKYMLRQGVLPSVFPWDKSRLEAIKAEATVKKEKNMDEPNADVMKGELEESTLDIKSEESTEESNQTIEDVKGEPKQEKLEDKQQPPGDQPSAINNSDLIDFTINNRIEALDFNQEWYPAKILEVDHQENEVLIHFEKFSSKYDEWVSMESSRLRPMQQTAVPETTASPVGRKVTGMTDMFEVGERCLAAWSNSQKFPATVSKVLENNTYEVLFDDGFVKTLKGHRMSKSGSKPLQASPLFEPIKSSKQDRREKKKKLNVASLFKKRHRASAGGGNASGGEAAEGEKPTKKVKHKADASLNAGAALAPDTSADDIQNWRPLWHKGKPVGTDAMLETSDGLRHTVIVPDPRLPEGWAKHLLRRSVKGGGVKWETYIVSPENRRFRSKYEVRVYLEANPTKGVNVNMFDFCLVKSKPKKTKKPPVEIPELPPAPLPVLESQDDSQMTEEQDSQDEDNSNSLKILFEDNAYKCPIEGCGKNFRRENLAQMHVKHYHPEYTKFLDSTPNVADLAYARTVGENLDKSPGPSSRPPGLKPAVKASTPKTSKLAQSPHPEMPDLRPMGAQSPGISKCKDAEIIKLLNSKPPDKTESDSAQGIPSGISPGGYPDMRLKDLLNKSEDVPKKDTFSKSFAVSRPAGIKTLLPVVRQQAVDPSQSQQQQSPSDPPSATGKRKRVASEISEHATRSKQHRATTPPPSQTSEQHPSPTPSVSQPPIPVTGDSPLPAAQPTPPPTGDLPPSQPDPPNNIIIEGGEVIKIVRMKQEEIINCTCGYTEEDGLMIQCELCLCWQHAYCNNIERESQVPEKYVCYICQNPFRERLSRKYYHDQDWLKQGILPTGSYHSRDEEQLQKRFEKLKKCHDLSGGLQELKDYMHSLAIKLKIAEMKNHPKLYLWAKMWEKNSLPEKVKEECNETKHKIENEDHQYIKTNEDSEKQEKPDDSMLMMILKAGKEVMPKLDLNLLMDNNMSQLPIIPQPEAAIDSTVCRDNLLHHIRHQESLVEERLDDFEKQIDALEECMDMEVDMNYPKMRHSLQMLARDLEKLKEFSHTTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260610;
- 90% Identity
- iTF_00249015;
- 80% Identity
- iTF_00249015;