Cmac017308.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_900659725.1
- Location
- CAACVG010011944.1:5739-32907[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-111 2.9e-107 358.5 24.3 1 300 73 386 73 386 0.94 2 2 0.057 1.1e+03 -1.3 0.2 127 281 391 427 386 437 0.40
Sequence Information
- Coding Sequence
- ATGTCTGCGGCCAGTGATGAGGAAGGGATGAAAGATCCGACAGATGATGAGCCTGAGGATGCAGGGGTAGAAACGTCGGGGTTTTTCGAAGATACAGACTTGCTTTCCAGCACTGCAAAGGATGCTGTCGCGACGCCTGACGCCTCGCAAGGTGCGACGGAAGGGTTCGACGAAAGTGATGTCATCTATTCCTTTATGAACGTTACCAGTGACGAGGCTGAAGCTCGACTATGGGCGAAGCGACAGGCGCGCGCCGAAGCGCGAGAGATCCGCATGCGCGAGCTGGAACGGCAACAGCGCGAGCAGGAGGAGAACGCCGACCGACAGTTCGACATGCTGGCCGGCTCGACGACGCAGGACTCGCCGGTGGCGGCGGTGGGGGGATGGGGGGGCGCCGTGACCGTGGGGGCGGCGCTAGCGGGCCCGGGGGCGGCGCGAACTCCAAGGTCCGCCGCGGCCGCCGCTTCCAGATACATGTCCAGCCGCCGGAGCTCAGAGGACTCGCTAGAAGATACCGGCAGTCTCAGGGAACTCAGGCATGAACTCAAGGAGGTTGAAGAAAAATTCCGAAAGGCCATGATAGCCAACGCCCAGTTGGACAACGACAAGACAGCCCAAACGTACCAATTGGAACTTCTGAATGATAGGTTAGAGGAATTGGAAGAGGAACAGGCCCAACTGAAGCGGGAACACCGGGACAAGTGCCGGGAGCACGACCAGCTCAAAAGGCTGTGCGCCCAGCTGAAGGACGAACTTGCCGCGGCGCGACTGGAGTTGCAGGAAAGGGATCGGCTGATCGCAGAGAAAGGGCTGGTGATAGTGGGGGGTGTGGAGGAGGACGCTGGAGGTGGCGGGGAGGTGGTGAAGAGGGCGCTCGTCACTGCCGATAACGCCAAGCTGTTGGAGAGCGCCGGAGAGGGGAGTCTAGACGTACGATTGGCGAAGTTTGCGAAAGAGAAGAGTGAGCTTGAAGATCAAATTAGCCATTTAAAATTAGAATTAGAAGAGGAAAAAAGCAAAAGACGGAAACCTGGATCAATAGGTCACCTTAACGGACCATCTTCTGATTATGACTACGATGATATGCAGAGGGAGGCTAGCAAACAGttggctgattacaaattccgCGCCCAGAAAGCGGAGCAAGACGTGGCAACACTGCAAGCAACAGTGGCGCGGTTGGAAAGTCAGGTGATCAGGTACAAAACGGCCGCCGAGGTGTCTGAACAATCCGAGGAGGCCTTGAAAGCGGAAAAGCGGAAGTTGCAAAGAGAGGATTCAGATTCTATAACTGATATATCCACTGATAGCTTTGATAGCTTACCTGATATTTGGTGTACAATGCAAACCTGA
- Protein Sequence
- MSAASDEEGMKDPTDDEPEDAGVETSGFFEDTDLLSSTAKDAVATPDASQGATEGFDESDVIYSFMNVTSDEAEARLWAKRQARAEAREIRMRELERQQREQEENADRQFDMLAGSTTQDSPVAAVGGWGGAVTVGAALAGPGAARTPRSAAAAASRYMSSRRSSEDSLEDTGSLRELRHELKEVEEKFRKAMIANAQLDNDKTAQTYQLELLNDRLEELEEEQAQLKREHRDKCREHDQLKRLCAQLKDELAAARLELQERDRLIAEKGLVIVGGVEEDAGGGGEVVKRALVTADNAKLLESAGEGSLDVRLAKFAKEKSELEDQISHLKLELEEEKSKRRKPGSIGHLNGPSSDYDYDDMQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREDSDSITDISTDSFDSLPDIWCTMQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248958;
- 90% Identity
- -
- 80% Identity
- -