Bsil001552.1
Basic Information
- Insect
- Bruchidius siliquastri
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949316355.1
- Location
- OX438529.1:32628681-32641201[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-110 6.3e-106 354.2 28.3 1 300 75 376 75 376 0.94 2 2 0.051 1e+03 -1.1 3.1 7 232 408 444 377 451 0.44
Sequence Information
- Coding Sequence
- ATGTCGGTCGCGAGCGATGATGACGGTGAAAAAGACAAAAGATCGCCGAACGATGATTCTGAAGACGCGGGGGCTGAAACGATGGGGCTCCTCGAGAAAAGTGACGTTTTTTACAGCACTGCCAAGGAAGCTTTTCCCACTCCGGATTGCTCGGACGATCTGTCTGAAGTTTTCGACGACAGTGACGTCATCTATTCGTTTATGAATATTACGAGTGATGAGGCGGAAGCTCGACTATGGGCGAAGAGGCAAGCACGCGCAGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAACGACAACAGCGCGAACAAGAAGAGAACGCGGACAGGCAGTTCGACATGTTGGCGGCGACGCAGGACTCGCCGGTGGCGGCGGCCGTCGTAGCGGGGGCGGCGCTAGTAGGCGCGGGGGCGGTACGAACGCCCCGATCGGCAACCGCTGCCACATCAAGATACATGTCCAGCCGGAGAAGTTCAGAGGACTCGCTAGAGGACACCGGCAGTCTCCGGGAGCTTAGGCATGAACTTAAAGAGGTTGAAGAAAAGTTCCGCAAGGCGATGATAGCCAATGCTCAGTTGGACAACGATAAGACGGCGCAGACGTACCAACTGGAACTCTTGAATGATAGGTTAGAGGAACTGGAAGAGGAGCACGCGCAACTCAAACGGGAGCACCGGGATAAGTGCCGGGAGCACGATCAGCTGAAGCGGCTTTGTGCGCAGCTGAAAGACGAGCTGGCGGCGGCGCGGCTTGAACTGCAGGAGCGAGACCGCCTGATAGCTGAAAAAGGGCTCGTGATAGTGGGTGGAGTGGAGGAGGATGGAGGAGAGGTTAAACGGGCGCTTGTCACCGCTGAGAATGCCAAGCTGTTGGAGACCGCCGGAGAAGGGAATCTGGATGTACGATTGGCGCAGTTTGCGAAAGAGAAGATTGAGCTTCAAGATCAAATTAGCCATTTAAAATTAGAATTAGAAGAGGAAAAAAGCAAAAGACGGAAACCTGGATCGATAGGTCATCTCAACGGGCCATCTTCAGATTACGATTATGATGATTTACAGAGGGAAGCCAGCAAACAATTGGCCGATTACAAATTCCGCGCTCAGAAAGCGGAGCAAGACGTGGCAACGTTGCAAGCGACGGTGGCGCGGCTTGAGAGCCAAGTGATCAGATATAAAACTGCCGCAGAGGTATCTGAGCAGTCCGAGGAGGCCTTGAAAGCGGAAAAGCGGAAATTGCAAAGAGAGGCAAGGGACGCCCTAAGCCGTGCAGAGGAATTAGAAACATCCAATACGCACTTGCTGAAGAGGTTAGACAAGTTGAAAAATGCGAAATCGGCGCTACTTAAAGAACTTTGA
- Protein Sequence
- MSVASDDDGEKDKRSPNDDSEDAGAETMGLLEKSDVFYSTAKEAFPTPDCSDDLSEVFDDSDVIYSFMNITSDEAEARLWAKRQARAEAREIRMRELERQQREQEENADRQFDMLAATQDSPVAAAVVAGAALVGAGAVRTPRSATAATSRYMSSRRSSEDSLEDTGSLRELRHELKEVEEKFRKAMIANAQLDNDKTAQTYQLELLNDRLEELEEEHAQLKREHRDKCREHDQLKRLCAQLKDELAAARLELQERDRLIAEKGLVIVGGVEEDGGEVKRALVTAENAKLLETAGEGNLDVRLAQFAKEKIELQDQISHLKLELEEEKSKRRKPGSIGHLNGPSSDYDYDDLQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260606;
- 90% Identity
- -
- 80% Identity
- -