Cvom007640.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
grau
Assembly
GCA_942486075.2
Location
CALNXM020000161.1:658336-660584[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.2 9.8 7.1 0.2 2 23 310 332 309 332 0.94
2 10 1.5 73 4.3 0.5 6 23 342 359 342 359 0.98
3 10 9e-05 0.0044 17.6 1.0 1 23 365 388 365 388 0.95
4 10 5.2e-05 0.0025 18.4 1.3 1 23 396 419 396 419 0.94
5 10 0.015 0.73 10.6 2.1 2 23 425 446 424 446 0.95
6 10 0.04 2 9.3 0.0 2 23 452 473 451 473 0.95
7 10 3.4 1.7e+02 3.2 1.8 2 23 482 503 481 503 0.84
8 10 0.0047 0.23 12.2 1.8 1 23 510 533 510 533 0.96
9 10 6.4e-06 0.00031 21.2 0.7 1 23 539 561 539 561 0.99
10 10 1.8e-05 0.00088 19.8 4.7 1 23 567 590 567 590 0.98

Sequence Information

Coding Sequence
ATGATTTGTCGATTGTGTTTAAAAGATTTTGACGATATTATAAACATTTTTGATAGCAATGGCCAGGAGCTTAATGTCGCCGAAGTTGTTGGTAAACATTTTTGGTTTGAGCCTCGAAAAGATGATCCAATTTCAACTTCAATCTGCAAAATGTGCTGGATTAAAGTGTGTGAATTTCATGAATTTTATGAGATGGTGGAACATGTACATCGTCATATGACAGAAAGGTTTATTGTAAAAACAGAAAGTGCTAAAGGAAAGCGTCGCTCGCCATTGAATGTTAATGATCTCATAAATTACAGTTCATTACCAAGTAAGCGTGAACCAGACGATGAATTTGATGAACTTGGTGAAGTACCATTCAATATGTTAATAGAAGATACCATGGACGAGCCTGGTAAAACCGTAGCTAAAGCAGCAGCAATTGCATTAGGAGCAGAAGATTCTCGTGATATATTGTCCCATCATAATTTCAGCCAAGACGAGTATGATAATGACATTGATGACAATAATGCGTGTGATGAGACTTACAATGAAGATGCTAAATTTAATAACCACAGTCATAACAGTGACAACGATGATACCTTCGATGGCGAAGCTTTCATGAATAATATATTAACAAATAAAAACAAAGAACCCGTAAAAAATCAAGAAACGACCACATCTTCATTTAAAACAGACAAACGTAGATCAACTAGAAATTCCAACAAAGCACAATTCGACAATACTGAAACAAATATTGAGTACAACACGACGACAGATTTAAAAAGAAGACGAGGACGACCAAAGAAAGGGGAAATTGTTGTGAAATCTGAACGTTGTCAAAAACAACCTAAAGAAAAACTTAATAAAACGGAAGAAGAACAAGATGCGTACAAAGCTAAGATGAAGGAAATCGATGATCAAATTGCTCAATACATGACCTTACACTGCGAGGTTTGCAATTCGGAATCGGAAAATTTTGCAGGATTAAGAGCTCATATGCGCGACGTGCACAACATCAAAAAGGGTTATGCTAAATGTTGCAACAAGAAGTTCTTAAAAAGAGCACTTCTTTTGGATCACATACGTCAGCATTTAGATCCGGATTGTTACAGATGTGAAGAATGTGATCGTACATTTGCTGATCGACAGTCAATGCGGAATCATTTCCTAGTTAAACATCAGAAAGATGAAGATAAAATTTACGAATGCTCTGTATGTTCTAAAAAGTTTGTGAGAAAATATTTGCTAGAACAACACAAAATGTTTGCCCATCGGGATCGGTCCACAACATGTAAATCTTGTAATAGAAGGTTTAATACATTAGAAGAGTTGTATGAGCACAATAAACAACATTGCAGCTATGGCACAATGTGTGATATATGTGCCAAAGTCATCCGGGGACCGGCCGCTTTTAAACGGCATCAGTTAGAACATCAGGGTGTTACAATGCCTAAAGTACAGTGTGATTTATGTGGTTCGTGGCATAAGGATAAATACGCTTTAAATAAGCATAAAAAACGTCATATGGAATCCAAACAACCACATGTTTGTGACATATGCCATAAAGTATCGCCCAGTCGCAGCGCTATGCTAAGTCATAAGCGCTACGTCCATGGAACAGAACGTTCATACGAATGTGGCGTTTGTCGAAAAACGTTTAAGAAGCCAATATCATTAAGAGAACATATGACTACGCACACCGGAGAGGTTTTATACAGGTGCCCCCACTGTCCCAAAACATTTAACTCTAATGCGAATATGCATTCGCATCGCAAAAAAGTACATCCCCGAGAATTTGAGGAGACTCGGAAGTTACGTAAACAGAATGCTCACCTAATTGACCAACCAATACCTACCATATCTGTGCTAAGCAACGCCAAAAAGGAAACCCAAGCTCTGTTGGTAATAGGTTCTGGGCAAAATGAAGAATCACATCATGTCCTAATAACTACAAGTGCAAATGATGACTTCAGTGACGATGACGATGTGACGGATTTATCAAAGGAAAAAATTACTGTACTCTACAAAAATTACAGCATTAATTAA
Protein Sequence
MICRLCLKDFDDIINIFDSNGQELNVAEVVGKHFWFEPRKDDPISTSICKMCWIKVCEFHEFYEMVEHVHRHMTERFIVKTESAKGKRRSPLNVNDLINYSSLPSKREPDDEFDELGEVPFNMLIEDTMDEPGKTVAKAAAIALGAEDSRDILSHHNFSQDEYDNDIDDNNACDETYNEDAKFNNHSHNSDNDDTFDGEAFMNNILTNKNKEPVKNQETTTSSFKTDKRRSTRNSNKAQFDNTETNIEYNTTTDLKRRRGRPKKGEIVVKSERCQKQPKEKLNKTEEEQDAYKAKMKEIDDQIAQYMTLHCEVCNSESENFAGLRAHMRDVHNIKKGYAKCCNKKFLKRALLLDHIRQHLDPDCYRCEECDRTFADRQSMRNHFLVKHQKDEDKIYECSVCSKKFVRKYLLEQHKMFAHRDRSTTCKSCNRRFNTLEELYEHNKQHCSYGTMCDICAKVIRGPAAFKRHQLEHQGVTMPKVQCDLCGSWHKDKYALNKHKKRHMESKQPHVCDICHKVSPSRSAMLSHKRYVHGTERSYECGVCRKTFKKPISLREHMTTHTGEVLYRCPHCPKTFNSNANMHSHRKKVHPREFEETRKLRKQNAHLIDQPIPTISVLSNAKKETQALLVIGSGQNEESHHVLITTSANDDFSDDDDVTDLSKEKITVLYKNYSIN