Pter028482.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596077.1:2689162-2691421[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.15 14 7.5 0.2 2 23 320 342 319 342 0.94 2 10 1.5 1.4e+02 4.3 0.5 6 23 352 369 352 369 0.98 3 10 8.9e-05 0.0085 17.6 1.0 1 23 375 398 375 398 0.95 4 10 5.2e-05 0.005 18.3 1.5 1 23 406 429 406 429 0.93 5 10 0.0099 0.94 11.1 1.7 2 23 435 456 434 456 0.94 6 10 0.025 2.4 9.9 0.1 2 23 462 483 461 483 0.96 7 10 1.6 1.6e+02 4.2 1.1 2 23 492 513 491 513 0.84 8 10 0.0017 0.16 13.6 0.7 1 23 520 543 520 543 0.96 9 10 2.6e-05 0.0024 19.3 0.4 1 23 549 571 549 571 0.99 10 10 1.8e-05 0.0017 19.8 4.7 1 23 577 600 577 600 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTCGACTGTGCTTAAAAGATTTGgaagaaattattaacatttttgatAGCAATGGCCAAGATCTTAATGTTGCCCAAGTTGTTGGTAAACATTTTTGGTTTGAGCCCCGCAAGGATGATCCCATCTCTACATCCATCTGCAAATTATGCTGGATTAAGGTTTGTGATTTCCATGAATTTTACGAGATGGTGGAACACGTTCATCGTCATATGACGGAGAGGTTTATAGTGAAGACAGAAAGTGCAAAGGGAAAACGTAGATCGCCAATGGACGTCAATGATCTCATTAATTATAGTTCATTACCAAGTAAGCGTGAACCAGACGATGAATTCGATGAACTTGGTGAAGTACCATTCAATATGTTAATAGAAGATACTCTCGATGAGCCGGGTAAAACTGTAGCTAAAGCAGCAGCAATTGCATTAGGCGCAGAAGATTCCCATGACATTTTGTCTCACCATAATTTTAGCCACGATGACGAGTATGATGAGGCTGATGACAATGCCGGATGTGATGAAGCCTTCAATAAAGATGCAAAATTTAGCAACAGCCACCACAGTCAAAACAGTGACAATGACGATACGTTCGATGGTGAAGCCTTCATGAATAATatattaacaaacaaaaataaagagcCGGTTAAGAATTCAGAAACGAACACAGAAACATCCTCAAGTAATGAGATAGAAAAACGTAGATCAACTAGAAATTCCAATAAAGTTCAAACAGAAACTGCTGGAACGATTAATGAATACAGTGATATAACGATGAATACAAAAAGAAGAAGAGGACGACCTAAAAAAGGAGAAATTGTTGTAAAATCTGAGGAATGTCGAAAAGAACGCAAAGGAAAAATAAAACCTAAAGGTAATGGAAGCGAAGAAGAACAGGATGCTTATAAGGCAAAAATGAAAGAGATTGATGATCAAATTGCTCAATACATGACTTTACACTGCGAAGTTTGCAATTCAGAATCGGAAAACTTTGCAGGTTTGAGAGCCCATATGCGTGAAgttcataatataaaaaaaggctATGCAAAATGTTGCAacaaaaagttcttaaaaagAGCCCTTCTTTTGGATCACATACGACAGCACTTAGATCCGGATTGCTACAGATGTGAAGAATGTGATCGTACATTTGCCGACCGACAGTCAATGCGAAATCATTTCTTGGTTAAACATCAAAAAGATgaagataaaatttttgaatgttCAGAATGTTCCAAGAAGTTCGTAAGAAAATATCTCCTAGAACAGCACAAAATGTTTGCACATCGTGATCGGACAACAACTTGTAAATCTTGTAACAGAAGATTCAGTACATTGGAATTGTTGTATGAACACAATAAGGAGCACTGTAGCTATGGTACAATGTGTGATATATGCGCCAAAGTCATACGGGGACCAGCCGCATTTAAACGCCATCAGATGGAACATCAGGGTGTTACAATGCCTAAAGTACAGTGTGATTTATGTGGTTCTTGGCACAAGGACAAATACGCTTTAAATAAACATGTTAAACGTCACATGGAATCTAAACAACCACATGTTTGTGATATATGTAACAAAGTGTCACCCACCCGCAGTGCTATGTTAAGTCATAAACGTTATGTCCATGGAACGGAACGTACGTATGAATGTGGTGTttgtagaaaaatgtttaagaagGCAATAGCCTTAAAGGAACACATGACAACACACACTGGCGAGGTTTTATATAGATGTCCACATTGTCCCAAAACATTTAACTCAAATGCAAATATGCATTCACATCGGAAAAAAGTACATCCCAGAGAATTTGAAGAGACACGAAAATTGCGAAAACAAAATGCACATCTTATTGAACAACCAATTCCAGCGCTATCTGTGCTATGCAATGCCAAAAAGGAAACGCAAGCTTTGTTGGTAATAGGTTCAGGACAAAATGAAGAATCACATCATGTCCTAATAACAACAAGTGCAAATGATGATTTTAGTGACGATGATGAAAATATAACGGATTTGTCAAAGGAAAAAATTACTgtactttataaaaattatagcaTTAATTAA
- Protein Sequence
- MICRLCLKDLEEIINIFDSNGQDLNVAQVVGKHFWFEPRKDDPISTSICKLCWIKVCDFHEFYEMVEHVHRHMTERFIVKTESAKGKRRSPMDVNDLINYSSLPSKREPDDEFDELGEVPFNMLIEDTLDEPGKTVAKAAAIALGAEDSHDILSHHNFSHDDEYDEADDNAGCDEAFNKDAKFSNSHHSQNSDNDDTFDGEAFMNNILTNKNKEPVKNSETNTETSSSNEIEKRRSTRNSNKVQTETAGTINEYSDITMNTKRRRGRPKKGEIVVKSEECRKERKGKIKPKGNGSEEEQDAYKAKMKEIDDQIAQYMTLHCEVCNSESENFAGLRAHMREVHNIKKGYAKCCNKKFLKRALLLDHIRQHLDPDCYRCEECDRTFADRQSMRNHFLVKHQKDEDKIFECSECSKKFVRKYLLEQHKMFAHRDRTTTCKSCNRRFSTLELLYEHNKEHCSYGTMCDICAKVIRGPAAFKRHQMEHQGVTMPKVQCDLCGSWHKDKYALNKHVKRHMESKQPHVCDICNKVSPTRSAMLSHKRYVHGTERTYECGVCRKMFKKAIALKEHMTTHTGEVLYRCPHCPKTFNSNANMHSHRKKVHPREFEETRKLRKQNAHLIEQPIPALSVLCNAKKETQALLVIGSGQNEESHHVLITTSANDDFSDDDENITDLSKEKITVLYKNYSIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260151;
- 90% Identity
- iTF_01259528;
- 80% Identity
- -