Basic Information

Insect: Panzeria rudis
Gene Symbol: grau
Assembly: GCA_956483635.1
Location: OY101450.1:149806868-149809083[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.058 6.6 8.9 0.2 2 23 311 333 310 333 0.95

2 10 1.6 1.8e+02 4.3 0.5 6 23 343 360 343 360 0.98

3 10 9.7e-05 0.011 17.6 1.0 1 23 366 389 366 389 0.95

4 10 3.3e-05 0.0037 19.1 2.1 1 23 397 420 397 420 0.94

5 10 0.01 1.2 11.2 2.3 2 23 426 447 425 447 0.95

6 10 0.045 5.1 9.2 0.1 2 23 453 474 452 474 0.95

7 10 3.7 4.2e+02 3.2 1.8 2 23 483 504 482 504 0.84

8 10 0.005 0.57 12.2 1.8 1 23 511 534 511 534 0.96

9 10 6.9e-06 0.00078 21.2 0.7 1 23 540 562 540 562 0.99

10 10 1.9e-05 0.0022 19.8 4.7 1 23 568 591 568 591 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.058	6.6	8.9	0.2	2	23	311	333	310	333	0.95
2	10	1.6	1.8e+02	4.3	0.5	6	23	343	360	343	360	0.98
3	10	9.7e-05	0.011	17.6	1.0	1	23	366	389	366	389	0.95
4	10	3.3e-05	0.0037	19.1	2.1	1	23	397	420	397	420	0.94
5	10	0.01	1.2	11.2	2.3	2	23	426	447	425	447	0.95
6	10	0.045	5.1	9.2	0.1	2	23	453	474	452	474	0.95
7	10	3.7	4.2e+02	3.2	1.8	2	23	483	504	482	504	0.84
8	10	0.005	0.57	12.2	1.8	1	23	511	534	511	534	0.96
9	10	6.9e-06	0.00078	21.2	0.7	1	23	540	562	540	562	0.99
10	10	1.9e-05	0.0022	19.8	4.7	1	23	568	591	568	591	0.98

Sequence Information

Coding Sequence: ATGATTTGTAGATTGTGTTTAAAAGATATTGAGGAAATTATTAACATATTTGACTGCAATGGCAAAGAACTTAACGTTGCTGCAGTtgttggtaaatatttttggttcgAGCCTCGAAAGGATGATCCAATTTCAACATCTATATGCAAAATATGCTGGAATAAAGTATGtgattttcatgaattttacGAGATGGTGGAACACGTCCATCGACACATGACGGAAAGGTTCATTGTAAAAACCGAAAGTGCAAAAGGAAAGCGCCGCTCGCCCATTAACGTTAATGATCTCATGAACTATAGTTCATTACCAAGTAAAAGGGAACCTGATGACGAATTTGATGAACTTGGTGAAGTGCCATTTAACATGTTAATAGAAGATACTTTAGACGAGCCTGGTAAAACAGTGGCTAAAGCAGCAGCTATTGCATTAGGCGCAGAAGATTCGCGAGATATTTTATCCCAACATGATTTCAGTCACGAGTATGATAATGGAGTAAATAATTATAGGTCTGATAAAACTTATAATAATGATGTAAATTTCAATAGTAGCAGCCACAATCAAAATAGTGATAACGATGATACCTTTGATGGAGAGGCTTTCATGAATAATATATTAACGAACAAAAGTAAGGAGcctgtaaaaaaacaacagtcGTCTATCTCACTTCCAATGAATGTAGAAAAACGTAGGTCTACAAGAAATTCCAACAAGGATCAAATGGATAATAATGGTTCTTCAAATAGTGCACTTAATAAATCAACAGATACAAAAAGAAGGCGAGGTCGACCAAAAAAGGGAGAAACTCCATTTAAATCAGAACGTTATCAAAAACAAtataaagacaaaaataaaactgaagaAGAACAAGATGCCTACAAGGCTAAAATGAAGGAAATCGATGATCAAATTGCTCGATATATGACTCTACACTGCGAGGTTTGTAATTTGGAGTCTGAAAACTTTGCAGGTTTAAGAGTTCATATGCGCGAAGTTCACAGTATCAAAAAAGGGTATGCTAAATGTTGCAACAAAAAGTTTCTGAAAAGAGCACTTTTATTGGACCATATACGCCAACATTTAGATCCAGACTGTTACAGgTGTGAAGAATGTGACCGCACATTTGCTGATCGACAGTCAATGCGAAATCATTTTTTGGTTAAACACCAAAAAGATGAGGACAAAATCTTTGAATGTTCTGATtgttcaaaaaagtttgtacgAAAATACCTTTTGGAGCAGCATAGAATGTTTTCACATCGTGATCGATCTACAACATGTAAATCTTGTAACAGAAGATTTAATACACTAGAAGAGTTGTTTGAGCACAATAAGCAGCATTGTACATATGGCACAATGTGTGATATATGTGCAAAAGTCATTCGGGGACCTGCTTTATTTAAGCGCCATCAGTTAGAGCATCAGGGTGTATCAATTCCTAAAGTGCAGTGCGATTTGTGTGGTTCATGGCATAAAGATAAGTAcgctttaaataaacataagaAACGTCATATGGAATCTAAACAACCACATGTTTGTGATATATGTCATAAGGTGTCTCCCAGTAGAAGTGCTATGTTAAGCCATAAGCGCTACGTCCACGGAACAGAACGTTCTTACGAATGTGGTGTTTgtagaaaaacatttaaaaagccAATTTCACTAAGGGAGCATATGACTACGCACACCGGTGAAGTTTTATATCGGTGTCCACACTGTCCAAAAACATTCAACTCAAACGCAAATATGCATTCTCATCGAAAAAAAGTGCATCCGAGAGAATTCGAAGAAACTCGTAAACTTCGGAAACAAAATGCCCACTTAGTTGATCAACCAATACCTGCTATATCTGTGCTTAGTAACGCCAAAAAAGAAACCCAAGCTTTGTTATTAATTGGATCTGGACAAAATGAAGAATCTCACCATGTTCTAATAACTACAAGCGCAAATGACGATTTTAGTGACGACGATGATGATGTAACGGACTTATCAAAGGaaaaaattactgtactttacaaaaattacagcATCAATTAA
Protein Sequence: MICRLCLKDIEEIINIFDCNGKELNVAAVVGKYFWFEPRKDDPISTSICKICWNKVCDFHEFYEMVEHVHRHMTERFIVKTESAKGKRRSPINVNDLMNYSSLPSKREPDDEFDELGEVPFNMLIEDTLDEPGKTVAKAAAIALGAEDSRDILSQHDFSHEYDNGVNNYRSDKTYNNDVNFNSSSHNQNSDNDDTFDGEAFMNNILTNKSKEPVKKQQSSISLPMNVEKRRSTRNSNKDQMDNNGSSNSALNKSTDTKRRRGRPKKGETPFKSERYQKQYKDKNKTEEEQDAYKAKMKEIDDQIARYMTLHCEVCNLESENFAGLRVHMREVHSIKKGYAKCCNKKFLKRALLLDHIRQHLDPDCYRCEECDRTFADRQSMRNHFLVKHQKDEDKIFECSDCSKKFVRKYLLEQHRMFSHRDRSTTCKSCNRRFNTLEELFEHNKQHCTYGTMCDICAKVIRGPALFKRHQLEHQGVSIPKVQCDLCGSWHKDKYALNKHKKRHMESKQPHVCDICHKVSPSRSAMLSHKRYVHGTERSYECGVCRKTFKKPISLREHMTTHTGEVLYRCPHCPKTFNSNANMHSHRKKVHPREFEETRKLRKQNAHLVDQPIPAISVLSNAKKETQALLLIGSGQNEESHHVLITTSANDDFSDDDDDVTDLSKEKITVLYKNYSIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260151;
90% Identity: iTF_00760476;
80% Identity: -