Cvom007332.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
-
Assembly
GCA_942486075.2
Location
CALNXM020000152.1:759320-762672[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00014 0.0067 17.0 0.6 1 23 135 158 135 158 0.97
2 13 7.1e-05 0.0035 17.9 1.4 2 23 164 186 163 186 0.97
3 13 1.9e-06 9.5e-05 22.9 3.4 1 23 195 218 195 218 0.97
4 13 7.6e-06 0.00037 21.0 5.0 2 23 466 487 466 487 0.98
5 13 5.9e-07 2.9e-05 24.5 3.2 1 23 493 516 493 516 0.96
6 13 0.00018 0.0091 16.6 2.1 1 23 521 544 521 544 0.98
7 13 6.4e-05 0.0032 18.1 1.2 1 23 555 577 555 577 0.95
8 13 0.001 0.05 14.3 3.0 1 23 582 605 582 605 0.97
9 13 3.5e-05 0.0017 18.9 0.8 1 23 611 633 611 633 0.96
10 13 0.00016 0.0077 16.8 1.9 1 23 639 661 639 661 0.98
11 13 8.1e-07 4e-05 24.0 1.6 3 23 669 689 668 689 0.99
12 13 5.6e-07 2.8e-05 24.5 0.3 1 23 695 717 695 717 0.99
13 13 0.0029 0.14 12.8 0.2 1 23 722 745 722 745 0.98

Sequence Information

Coding Sequence
ATGGAAATAAATAAAAGTTTGCCAAGCTACAATAAAAATACAATTTGCCGTATATGTATGCAGGATGATGCCAATTTATTTCCCATTTTTAATGAGATATTCTTTGGCGACGACACCATCACTATAGCTAAGATTATTACAGAGTGTACAAAATATCCAGTGGCACACAATGATCAGCTACCAGCACAAATATGCAATGCATGCATGGAAGCAGCCCGCAATGCCCATCAATTTAAAAGACAAACAGAAGAGGCTTACTGCCATCTAAAGGCGTTGTATGATATAACATGGGTTCCCAAACAGGAGAAGGGTAGCGGTAGTAGTATTAGAAGTGGTGCAGCAGCTGTGAGGGTGAGTGCCCTCACCACAGACAAGTATACACAAACCGAAAAAAGCTCTGTGTTTCAGTGTGAGATTTGCCCAAAAAAGTTTTTTGTCGAAACTGAATTAAGGCAACATCGTGCCACAAGCCACATAAATGATGGCAAAAAATGTCGTGTATGTGGTGAAACATTTAATCACTTGGGCCAGTTGAAGGTTCATTTGTCCACTGAACATCCCAGTGAAGGTATACGTTGTGATTTCAAGTGTAATGTATGCTCAAGAGAATTTACCCGTAAGGACCATTTGAAAAGACATTTAATACGGGTACACAAGATTAAGGATGACAAATTAAATATTTCTAAAGTATCGCTTGATGAACCTGAAATTGAAAATCCTCCAGCTTGTTTAAATAACTACAGCAGTCATTGGCCGGATTACCAAGAGGATGATGACAATGAACCTATAGCCAATAATGAAACAATGGCCGCTACAAATCCTTTCTCTAGTGAAGACGAAGGACTGGATCATCATAATTTCAATGATATGGACGAAGAAGATGTTAAACAATTTGTCGAGACTATAGCCCATCCAGAAATATCCATAAAAGTTGAAAATCCCGACTTCAGTTACAATATTTCAAGCGATAAAAATGAAAAACTAAATAAATCCACAAATAGTTCATTTGAAGCAATAAAACCACAAGTGTTTGATTTAAAACCGGAAAAATCCGAGGATAATATAGAAATAAAAGAACATGATGAGGACGATGAAGAAGAGGGTGGGGAAGATAATCTTAACAATTCATTTCATGAGCATCATAGCAACAATACAAGTGAGGATGAAGATACAGATGAGGATTATCAAGATGACAGTGAAGATGAGGATGTTGACAATTTCGAACCTAGTAAAAAGACCACCAAGTCTGACATGTTGACTTCAATTAAACAAGAACAGCAAACTATGGTACAAACTGAAAATCCTACAAGTTCCACCGCTAACATCAAAACTAAAATTAAAGCCTCAACAAAACCACCAAGACGGCGTCATGGTTCCTCTAAAAACGAAGATAATCGTTGTAAAGAATGTAATCGTACGTTTACCCGCTACAATCATCTACTGCGCCATATGCTGACCCACAGTGATGAAAAGCCGCATGTGTGTAATTTTTGTGGCAAAGGCTTTTCACGTTCGGATCATTTGCAAAAGCATATACAGAGTATACATTGTGAAAAGAACTATAAATGTGATCAGTGTTCTAGTGCTTATGGTCGCAAAGATCATTTGCAACGACACATAGAGACAAGACACAATAAAGACCCCACCGTCCAAAAGCCCCAATTCGATTGTGATATGTGTGAGAAAAAGTTTACCACCAAGGCCTATTTGGCAAAACACAAATTGTTACATACAGATCGCCTGTATGCTTGTAAACATTGTTCGGAAACGTTCCCCGAAAAGGAACAAATGAAAGAACATCAAAAGAAAAAACATGCACAGCCCCGCAATTTTCTATGCAATATTTGCGGAGATTCCTTTCAACGCAATGAATACCTTAAAATTCATATGCGGCGTCATACGGGTGAGAAGCCCTACAAATGCCGATTTTGTGAAAAAGGTTTTCCACGTAGCACAGACTTGAAAATGCATGAAAGATATCATATTGGACATAAACCGAATCTCTGTAATTTGTGCGGCAAAGGTTTTCATCGTCCTTACAATCTTACTATACACATGCGCACCCATACGGGAGAGAAGCCCTACAAATGCAATCAATGCCCTCAAGCGTTTGCTCAAAGTAATGACTTGAAAGCTCATATACGACGCCATACGGGAGAACGTTTTCGTTGTGATTTGTGCAGTGCCGCATTTTTGCAACGTTATGGTTTAAACGCTCACTTAAGGACGGTGCATGGTATTATAGTTACTTCATTTACCGGACGTTTGCGTAAAACTGATCAGTCTGTTGAAGGTGCAGAGCAACTTGATCCACAACCGCCAACGGCTGCCCTACCACCACTGCAAACAACCCCTGCACAAGAGCAGACGCAAGCCTCTCTGCCTTCGCCTCATATAGATAGTAATGTAACACCTCCGCCTTTGTATTTAGGTCATCATTTCATAAATCCAATACTACCAGTTGTTGTTGCCACCAACGCCACCAATACACCAGCATCCCCCCTTGATATTTCATCATCGAGTGCTTCGTTGCCTCTACCCTTAGCACATCCCTCAACGCAACAAATGTAA
Protein Sequence
MEINKSLPSYNKNTICRICMQDDANLFPIFNEIFFGDDTITIAKIITECTKYPVAHNDQLPAQICNACMEAARNAHQFKRQTEEAYCHLKALYDITWVPKQEKGSGSSIRSGAAAVRVSALTTDKYTQTEKSSVFQCEICPKKFFVETELRQHRATSHINDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCDFKCNVCSREFTRKDHLKRHLIRVHKIKDDKLNISKVSLDEPEIENPPACLNNYSSHWPDYQEDDDNEPIANNETMAATNPFSSEDEGLDHHNFNDMDEEDVKQFVETIAHPEISIKVENPDFSYNISSDKNEKLNKSTNSSFEAIKPQVFDLKPEKSEDNIEIKEHDEDDEEEGGEDNLNNSFHEHHSNNTSEDEDTDEDYQDDSEDEDVDNFEPSKKTTKSDMLTSIKQEQQTMVQTENPTSSTANIKTKIKASTKPPRRRHGSSKNEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPTVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFPEKEQMKEHQKKKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQSVEGAEQLDPQPPTAALPPLQTTPAQEQTQASLPSPHIDSNVTPPPLYLGHHFINPILPVVVATNATNTPASPLDISSSSASLPLPLAHPSTQQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01261178;
90% Identity
iTF_00045476; iTF_00200050; iTF_00259072;
80% Identity
-