Cvic025591.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vicina
Gene Symbol
-
Assembly
GCA_958450345.1
Location
OY288235.1:104429973-104433380[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00013 0.012 17.0 0.6 1 23 134 157 134 157 0.97
2 13 6.9e-05 0.006 17.9 1.4 2 23 163 185 162 185 0.97
3 13 1.9e-06 0.00016 22.9 3.4 1 23 194 217 194 217 0.97
4 13 7.3e-06 0.00063 21.0 5.0 2 23 467 488 467 488 0.98
5 13 5.6e-07 4.9e-05 24.5 3.2 1 23 494 517 494 517 0.96
6 13 0.00018 0.016 16.6 2.1 1 23 522 545 522 545 0.98
7 13 6.2e-05 0.0054 18.1 1.2 1 23 556 578 556 578 0.95
8 13 0.00099 0.086 14.3 3.0 1 23 583 606 583 606 0.97
9 13 3.4e-05 0.0029 18.9 0.8 1 23 612 634 612 634 0.96
10 13 0.00015 0.013 16.8 1.9 1 23 640 662 640 662 0.98
11 13 7.8e-07 6.8e-05 24.0 1.6 3 23 670 690 669 690 0.99
12 13 5.4e-07 4.7e-05 24.5 0.3 1 23 696 718 696 718 0.99
13 13 0.0019 0.16 13.4 0.2 1 23 723 746 723 746 0.98

Sequence Information

Coding Sequence
atggaaataaataaaagtttgccAAGctacaataaaaatacaatttgccGTATATGCATGCAGGATGATGCCAATTTATTTCccatatttaatgaaatattcttTGGCGACGACACCATCACTATAGCTAAGATTATTACAGAGTGTACAAAATATCCAGTGGCTCACAATGATCAGCTACCAGCACAAATATGCAATGCCTGCATGGAAGCAGCCCGCAACGCCCATCAATTTAAAAGACAAACAGAAGAGGCTTACTGCCATCTAAAGGCGTTGTATGATATAACATGGGTTCCCAAACAGGAGAAGGGTAGCGGTAGTAGTAGAAGTGGTGCAGCAGCTGTGAGGGTGAGTGCCCTCACCACAGACAAGTATACACAAACCGAAAAAAGCTCTGTGTTTCAGTGTGAGATTTGCCCGAAAAAGTTTTTTGTCGAAACTGAATTAAGGCAACATCGTGCCACTAGCCACATAAATGATGGCAAAAAATGTCGTGTATGTGGTGAAACATTTAATCATTTGGGCCAGTTGAAGGTCCATTTGTCCACTGAACATCCCAGTGAAGGTATACGATGCGATTTCAAGTGTAATGTATGCTCAAGAGAATTTACCCGTAAGGACCATTTGAAAAGACATTTAATACGGGTACACAAGATCAAGGATGACAAATTGAATATtTCTAAAGTATCGCTTGATGAACCTGAAATTGAAAATCCTCCAGCTTGTTTAAATAACTACAGCAGTCATTGGCCGGATTACCAAGAGGATGATGACAACGAACCCATAGCCAATAATGAAACTATGGCCGCTACAAATCCTTTCTCTAGTGAAGACGAAGGACTGGATCATCATAATTTCAATGATATGGACGAAGAAGATGTTAAACAATTTGTCGAGACTATAGCCCATCCAGAAATATCCATAAAAGTTGAAAACCCCGACTTCAGTTACAATCTTTCAAGcgataaaaatgaaaaactaaataaatccaCTAATAGTTCATTTGAGGCAATAAAATCACAAGAGTTTGATTTAAAACCGGAAAAATCCGAGgataatatagaaataaaagaaaatattgagGACGATGAAGAAGAGGGCGGGGGAGATAATCTTAACAATTCATTTCATGAGCATCATAGCATCAATACAAGTGAGGAGGATGATTCAGATGAGGTTTATCAAGATGACAGTGAAGATGAGGATGGTGATGGTGACAATTTCGAACCGAGTAAAAAGACCAACAAGTCTGACGTGTTGACTTCAATTAAAGAAGAGCAGCAAACTATGGTACAAACTGAAAATCCTACAAGTTCCACCGCCAACatcaaaactaaaattaaagccTCAACGAAACCACCAAGACGACGTCATGGTTCCTCTAAAAACGAAGATAATCGTTGTAAAGAATGTAATCGCACGTTTACCCGCTACAATCATCTACTGCGCCATATGCTGACCCACAGTGATGAAAAGCCCcatgtgtgtaatttttgtgGCAAAGGCTTTTCACGTTCGGATCATTTGCAAAAGCATATACAGAGTATACATTGTGAAAAGAACTACAAATGTGATCAGTGTTCTAGTGCTTATGGTCGCAAAGATCATTTGCAACGacacatagagacgagacacaaTAAAGACCCCACCGTCCAAAAGCCCCAATTCGATTGTGATATGTGTGAGAAAAAGTTTACCACCAAGGCCTATTTGGCAAAACACAAATTGTTGCATACAGATCGCCTGTATGCTTGCAAACATTGTTCGGAAACGTTCCCCGAAAAAGAACAAATGAAAGAAcatcaaaagaaaaaacatgcGCAGCCCCGCAACTTTCTGTGCAATATTTGCGGAGATTCCTTTCAACGCAATGAATATCTTAAAATTCATATGCGTCGTCATACGGGTGAGAAGCCCTACAAATGCCGATTTTGTGAAAAAGGTTTTCCACGTAGCACAGATTTGAAAATGCATGAAAGATATCATATTGGACATAAACCAAATCTATGTAATTTATGCGGCAAAGGTTTTCATCGTCCCTACAATCTTACTATACACATGCGCACCCATACGGGAGAGAAACCCTATAAATGCAATCAATGCCCACAAGCGTTTGCTCAAAGTAATGACTTGAAAGCTCATATACGACGCCATACGGGAGAACGTTTTCGTTGTGATATGTGCAGTGCCGCTTTTTTGCAACGTTATGGTTTAAACGCTCACTTAAGGACGGTGCATGGTATTATAGTTACTTCATTTACCGGACGTTTGCGTAAAACTGATCAGCCTGTTGAGGGTGCAGAGCAACTTGATCCACAACCACCAACGGCTGACCTAACACCACTGCAAACAGCCCCTGCACAAGAGCAGACGCAAACCTCGCTGCCTTCGCCTCACATAGATAGTAATGTAACACCTCCGCCTTTGTATTTAGGTcatcatttcataaatccaaTACTACCAGTTGTTGTTGCCACCAACACCACCAATACACCAACATCCCCCATTGATATTTCATCTTCAAGTGCTTCGTTGCCTCTACCCTTAGCACATCCCTCAACGCAACAAATGTAA
Protein Sequence
MEINKSLPSYNKNTICRICMQDDANLFPIFNEIFFGDDTITIAKIITECTKYPVAHNDQLPAQICNACMEAARNAHQFKRQTEEAYCHLKALYDITWVPKQEKGSGSSRSGAAAVRVSALTTDKYTQTEKSSVFQCEICPKKFFVETELRQHRATSHINDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCDFKCNVCSREFTRKDHLKRHLIRVHKIKDDKLNISKVSLDEPEIENPPACLNNYSSHWPDYQEDDDNEPIANNETMAATNPFSSEDEGLDHHNFNDMDEEDVKQFVETIAHPEISIKVENPDFSYNLSSDKNEKLNKSTNSSFEAIKSQEFDLKPEKSEDNIEIKENIEDDEEEGGGDNLNNSFHEHHSINTSEEDDSDEVYQDDSEDEDGDGDNFEPSKKTNKSDVLTSIKEEQQTMVQTENPTSSTANIKTKIKASTKPPRRRHGSSKNEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPTVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFPEKEQMKEHQKKKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPVEGAEQLDPQPPTADLTPLQTAPAQEQTQTSLPSPHIDSNVTPPPLYLGHHFINPILPVVVATNTTNTPTSPIDISSSSASLPLPLAHPSTQQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01261178;
90% Identity
iTF_00259941;
80% Identity
-