Bbay013149.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493266.1:1119290-1122595[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00013 0.01 17.0 0.6 1 23 134 157 134 157 0.97 2 13 6.7e-05 0.0055 17.9 1.4 2 23 163 185 162 185 0.97 3 13 1.8e-06 0.00015 22.9 3.4 1 23 194 217 194 217 0.97 4 13 7.1e-06 0.00058 21.0 5.0 2 23 463 484 463 484 0.98 5 13 7.2e-07 5.8e-05 24.1 3.6 1 23 490 513 490 513 0.96 6 13 0.00017 0.014 16.6 2.1 1 23 518 541 518 541 0.98 7 13 6.1e-05 0.0049 18.1 1.2 1 23 552 574 552 574 0.95 8 13 0.00057 0.047 15.0 4.0 1 23 579 602 579 602 0.97 9 13 3.3e-05 0.0027 18.9 0.8 1 23 608 630 608 630 0.96 10 13 0.00015 0.012 16.9 1.9 1 23 636 658 636 658 0.98 11 13 7.6e-07 6.2e-05 24.1 1.6 3 23 666 686 665 686 0.99 12 13 5.3e-07 4.3e-05 24.5 0.3 1 23 692 714 692 714 0.99 13 13 0.0018 0.15 13.4 0.2 1 23 719 742 719 742 0.98
Sequence Information
- Coding Sequence
- ATGGAAATAAATACAAGTTTGCCAAgctacaataaaaatacaatttgccGTATATGTATGCAGGACGATGccaatttgttttcaatattcaaTGAAATATTCTTTGGCGACGACACCACCACAATAGCTAAAATTCTTACAGAGTGTACAAAATATCCAGTGGCACACAATGATCAGTTACCAGCACAAATATGCAATGCCTGCATGGAAGCGGCTCGCAACGCCCATCAATTTAAAAGGCAAACGGAAGAGGCTTACTGCCATCTAAAGGCGTTGTATGATGTAACATGGGTTCCCAAACAGGAGAAAGGTAATGGCAGTAGTAGAAGTGGTGCAACAGCTGTAAGGGTGAGTGCCCCCACCACAGACAAGTATACACAAACCGAAAAAAGCTCTGTGTTTCAGTGTGAGATATGCCCGAAAAAGTTTTTTGTCGAAACTGAATTAAGGCAACATCGTGCCACTAGCCACATAAATGATGGTAAAAAATGTCGTGTATGCGGTGAAACATTTAATCATTTGGGCCAGTTAAAGGTCCATTTGTCTACAGAGCATCCCAGCGAGGGTATACGTTGTGAATTTAAGTGTAATGTATGCTCAAGAGAATTTACCCGTAAAGACCATTTGAAAAGACATTTAATACGGGTACACAAGATCGAGGATgacaaattaaatatTTCTAAAGTTTCTCTTGATGAACCTGAAATTGAAAATCCTCCAGCTAGTTTAAATAACTACAGCAGTCATTGGCCGGATTATCAAGAGGACGATGACAACGAACCTCTAGTCAACAACGAAACCATGGCTGCTACAAATCCTTTCTCCAGTGAAGACGAAGGCCTGGATCATCATAACTTCAATGATATGGACGAAGAAGATGTTAAACAATTTGTCGAGACTATAGCCCATCCAGAAATATCCATAAAAGTTGAAAACCCCGACTTCAGTTACAATATTACGAatgataaaaatgaaaaactaaataaatctaCAAATAGTTCATTTGAGGCAATAAAATCACAAGTGTCTAATTTAAAACCGGAAAAATCCGATGATaacatagaaataaaagaaaatgatgatgatgacgacgaaGAAGAATGCGGAGAAGATAATCTCAACAAttcatttcatgagcatcataGCAATACAAGTGAGGAGGAAGATACAGATGAGGATTATCAACATGACAGTGAAGATGATGGTGGTGACAATTTTGAACCGAGTAAAAAGTCCGACAAGTCTAACATGTCTTCAATTAAACAAGAGCAAACTAAGATACAAACAGAAAATCCTACAAGTTCCACCGCCAACatccaaaataaaattaaagcctCAATAAAACCTCCAAGACGACGTCATGGTTCCTCCAAAAACGAAGATAATCGTTGTAAAGAATGTAATCGCACGTTTACCCGCTACAATCATCTACTGCGCCATATGCTGACCCACAGCGATGAAAAGCCACATGTTTGCAAATTTTGCGGTAAAGGCTTTTCACGTTCGGACCATTTGCAAAAGCATATACAAAGTATACATTGTGAAAAGAACTACAAATGTGATCAGTGTTCTAGTGCATATGGTCGAAAAGATCATTTGCAACGGCATATAGAAACCAGGCACAATAAAGACCCCACGGTACAAAAACCCCAATTTGATTGTGATATGTGTGAGAAAAAGTTTACCACCAAGGCCTATTTGGCAAAACACAAATTGTTACATACGGATCGTCTGTATGCTTGCAAACATTGTTCCGAAACTTTCTCCGAAAAGGAACAAATGAAAGAAcaccaaaagaaaaaacatgcCCAACCCCGCAATTTTCTGTGCAATATTTGCGGAGATTCCTTTCAACGCAATGAATATCTCAAAATTCATATGCGTCGTCATACGGGTGAGAAGCCCTATAAATGTCGTTTTTGCGAAAAAGGTTTTCCACGTAGCACTGATTTGAAAATGCACGAAagATATCATATTGGGCATAAACCAAATCTCTGCAATTTATGCGGCAAAGGTTTTCATCGTCCCTACAATCTTACTATACACATGCGCACCCATACAGGTGAGAAGCCTTACAAATGTAATCAATGCCCCCAAGCGTTTGCTCAAAGTAATGACTTGAAAGCTCATATAAGACGTCATACAGGAGAACGTTTTCGTTGTGATATGTGCAGTGCCGCATTTTTGCAACGTTATGGTTTAAATGCTCACTTAAGGACGGTACATGGTATAATAGTTACTTCATTTACCGGACGTTTACGTAAAACTGATCAACCCGCTGAGGGTGCAGAACCACTTGATCCACAACAACCGCTGGCTGCCCTGTCAGCGCTACAAACAGTCCCTGCACAAGAGCAGGCGTCAGTATCGCTGCCTTCACCTCATATAGATAATAATGTAACACCTCCGCCTTTGTATTTAGGTCATCATTTCATAAATCCTATACCACCAGTTGTTGTTGCCACCACCAATACATCAACATCTCCCATTGATATTTCCTCGTCAAGTGCTTCGTTGCCGCTTCCCTTAGCACATCCATCaacacaacaaatttaa
- Protein Sequence
- MEINTSLPSYNKNTICRICMQDDANLFSIFNEIFFGDDTTTIAKILTECTKYPVAHNDQLPAQICNACMEAARNAHQFKRQTEEAYCHLKALYDVTWVPKQEKGNGSSRSGATAVRVSAPTTDKYTQTEKSSVFQCEICPKKFFVETELRQHRATSHINDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCEFKCNVCSREFTRKDHLKRHLIRVHKIEDDKLNISKVSLDEPEIENPPASLNNYSSHWPDYQEDDDNEPLVNNETMAATNPFSSEDEGLDHHNFNDMDEEDVKQFVETIAHPEISIKVENPDFSYNITNDKNEKLNKSTNSSFEAIKSQVSNLKPEKSDDNIEIKENDDDDDEEECGEDNLNNSFHEHHSNTSEEEDTDEDYQHDSEDDGGDNFEPSKKSDKSNMSSIKQEQTKIQTENPTSSTANIQNKIKASIKPPRRRHGSSKNEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCKFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPTVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFSEKEQMKEHQKKKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPAEGAEPLDPQQPLAALSALQTVPAQEQASVSLPSPHIDNNVTPPPLYLGHHFINPIPPVVVATTNTSTSPIDISSSSASLPLPLAHPSTQQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261178;
- 90% Identity
- iTF_00259941;
- 80% Identity
- -