Cvic022322.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:41736547-41741582[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.033 3.9e+02 2.2 0.3 22 43 35 56 27 64 0.84 2 8 0.019 2.3e+02 3.0 0.0 25 48 65 88 56 91 0.82 3 8 6.8e-05 0.81 10.8 0.1 25 44 94 113 88 117 0.86 4 8 0.24 2.9e+03 -0.6 0.2 26 48 123 145 117 147 0.80 5 8 0.00029 3.4 8.8 0.1 22 44 219 241 209 246 0.90 6 8 0.0092 1.1e+02 4.0 0.0 26 45 250 269 241 274 0.85 7 8 0.00081 9.7 7.4 0.1 22 46 275 299 272 301 0.86 8 8 0.12 1.4e+03 0.4 0.2 26 48 307 329 302 331 0.85
Sequence Information
- Coding Sequence
- ATgcacaaatatacaaaatatcatGTTTGCGACGTTTGTGGtcaaaagtataaaaacaaagaatcATTCAAAAATCATTATGCCAAACATCAAGGTATCATTGAACCAGCCGCACAATGTTCCATATGCAATAGGTGGCTTAAAAACAAGCACAGTCTGAGGTTGCATCGTTTTGTTCATGAGAAACACACTACACCGTGTGACATATGTGGAAAGGTGTTTGATACCAAACATAGTCTGCGCAAACACAAGTCCTACTGGCACAAGTCCGACTTGAATTTACAGTGTAGCTTTTGTGAGAAAGTTTTTCGACAAGAGCGTAATCTGCAAGAGCACATGGCTACACACACTGGAGTGCAGCTTTATAAATGTCCACATTGTCAAAAAGAGTCACGTTCAAAATCGAATATGTACGTTCATATAAAGAGACAGCATCCAACTGAATGGTGGCAATCGAAAATGGAACGTTTAAATATCGATCCAAAAGCGGAGAATACTGAATTGCATCAACAATGTGCAACTATATATCGTTTGCGTAATCATATTGCATCCGTACACAATAATATATACCACCATATTTGTGACATTTGTGGAAAGAAATTCAAATCAAAGACATCCTTTCAAAAGCACTACGACGAACATCAAGGCATTGTTGAACCACCGGCTCAATGTACAATCTGTGGTGCATGGTTGAAAAATCAACACAGCCTACGTGTACATCATCAAACACATGAAGACACACAGTTTGCCTGCGATATTTGTGGTAAATTCTTCAAGACTAAAAAGAATTTGAGTCGTCACAAAGGCTATTGGCATCGGCGAGAACGCAATCTTTCGTGTAGCTATTGCGACAAAGTGTTTCGTGAAAAACGCAATCTTGACGAACACATGGCCATGCATACAGACACCAACCTGTATACATGTCCGCATTGTGGCAAAGAGTCAAGATCCAAATCAAATATGTATGTGCATATAAAACGTCAGCATCCAGACGAATGGTGGAAATCAAAACAGGAACGTTATAAATTAAAACCCGAAGAAGGTGGACAAGCAGGCGGAGAAGATGAGGTAAAAGATAAGTCACCAGTAATAGACGCACCAGTATCATCAACTCTAGCACAGGAATGTATTAATAcggaataa
- Protein Sequence
- MHKYTKYHVCDVCGQKYKNKESFKNHYAKHQGIIEPAAQCSICNRWLKNKHSLRLHRFVHEKHTTPCDICGKVFDTKHSLRKHKSYWHKSDLNLQCSFCEKVFRQERNLQEHMATHTGVQLYKCPHCQKESRSKSNMYVHIKRQHPTEWWQSKMERLNIDPKAENTELHQQCATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEEGGQAGGEDEVKDKSPVIDAPVSSTLAQECINTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259066; iTF_00259098; iTF_01261213;
- 90% Identity
- iTF_00259066; iTF_00259098;
- 80% Identity
- iTF_00259066; iTF_00259098;