Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288233.1:132814855-132819711[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.01 0.91 11.1 0.1 3 23 34 54 32 54 0.96

2 17 0.006 0.52 11.8 3.0 1 23 60 83 60 83 0.97

3 17 0.15 14 7.4 0.3 3 23 88 110 86 110 0.88

4 17 0.0035 0.31 12.6 0.1 1 22 118 139 118 139 0.95

5 17 1.6e-05 0.0014 19.9 1.5 1 23 147 169 147 169 0.97

6 17 0.00015 0.013 16.8 3.5 1 23 175 197 175 197 0.98

7 17 0.0002 0.018 16.4 1.0 1 23 203 225 203 225 0.95

8 17 0.24 21 6.7 2.1 2 21 232 251 231 252 0.95

9 17 4.4 3.9e+02 2.8 0.2 2 23 690 712 689 712 0.93

10 17 0.4 35 6.1 0.6 1 10 736 745 736 758 0.79

11 17 4.2 3.6e+02 2.9 3.9 1 22 766 788 766 790 0.89

12 17 2.7 2.4e+02 3.4 1.0 3 23 796 817 796 817 0.95

13 17 0.25 22 6.7 0.3 2 21 830 849 829 850 0.91

14 17 0.00026 0.023 16.1 0.9 1 23 858 880 858 880 0.98

15 17 8.1e-06 0.00071 20.8 1.8 1 23 886 909 886 909 0.97

16 17 8.4e-05 0.0074 17.6 1.3 1 23 915 937 915 937 0.98

17 17 0.00054 0.047 15.1 1.1 1 21 943 963 943 964 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.01	0.91	11.1	0.1	3	23	34	54	32	54	0.96
2	17	0.006	0.52	11.8	3.0	1	23	60	83	60	83	0.97
3	17	0.15	14	7.4	0.3	3	23	88	110	86	110	0.88
4	17	0.0035	0.31	12.6	0.1	1	22	118	139	118	139	0.95
5	17	1.6e-05	0.0014	19.9	1.5	1	23	147	169	147	169	0.97
6	17	0.00015	0.013	16.8	3.5	1	23	175	197	175	197	0.98
7	17	0.0002	0.018	16.4	1.0	1	23	203	225	203	225	0.95
8	17	0.24	21	6.7	2.1	2	21	232	251	231	252	0.95
9	17	4.4	3.9e+02	2.8	0.2	2	23	690	712	689	712	0.93
10	17	0.4	35	6.1	0.6	1	10	736	745	736	758	0.79
11	17	4.2	3.6e+02	2.9	3.9	1	22	766	788	766	790	0.89
12	17	2.7	2.4e+02	3.4	1.0	3	23	796	817	796	817	0.95
13	17	0.25	22	6.7	0.3	2	21	830	849	829	850	0.91
14	17	0.00026	0.023	16.1	0.9	1	23	858	880	858	880	0.98
15	17	8.1e-06	0.00071	20.8	1.8	1	23	886	909	886	909	0.97
16	17	8.4e-05	0.0074	17.6	1.3	1	23	915	937	915	937	0.98
17	17	0.00054	0.047	15.1	1.1	1	21	943	963	943	964	0.95

Sequence Information

Coding Sequence: ATGGCCGACGCTAGTGCCGCCTCTACATCTTCAGCCGCTGCTGCTGCCCAACAAAACATGCTTGTCAAACTCTCCACGGACGGTGTTCCCAAACTTTTCTGTCCCATCTGCAACAAAGCCTTAGTATCTCTGGCCGGCTATGTGAAACATGTCAAGAAACATGATCCGCCCGGTGGTTTCATATGCCGCTATTGTGATTCCCGTTTCTGTTCCGATGAGGAACTTAAAAAACATCGTGAAACCGAACACACCACCATAGCCTGTCGCCTATGCAAAGATACCACTTTCACCAATGAAGATGATTATCGATCGCACATTAGAGACATACACCAGGGTGTGGATAGAGAGATATTTACGTGCGAAAAATGTGGAGCCGCCTACAAGACCATCGATCCCTATCGCCGGCATATGGAAACGGAGTGTGGCCGCATAAAGCCCTACAAATGTGATAAATGCCAGTTGGCTTTTGTGACCAAATACAATTTGAAACAACATTTGGATAATCATTCGGGTGAATTGAAATTCTGTTGCAGTTATTGCGGACGTAATTTTAAGCAAAAGGCTCGTTTGGTGGAACATGAGAGGACGCATACGGGTGAGAAGCCGTATAGTTGTGATGTTTGCGGCAAAAGTTTCTCCCATCGTGAAAGTATTGTAACACATTCTTCCATTCATACCGGCATACGTCTGGTGGAATGTAAGGGCTGCACCTCCAGATTTTCTTGTTATTCCAATCTAATCAAGCATCGCAGAAATCGTCCAGATACCTGTGGTTTGCCGCAGTTTGATCCACCCAGGAATCGCATTAGAAAACATACTTCAAGAATTCCGGCCACTTTAAATCCCACCTCCGAAATCAAAGTGGTAAATGTCAATAAAATCATTAAGCCTGATGATCAGGTGAAAGTGGCCAACCTTAAGAAAGAATCGCCCAATAAACCTGCCAGCAGCAAGCCTGTGAAAACAAAACCCACGGCCCGCAAGCGTACGGGACCCGCACCCGCACCCCAAACCGCACCACCCACTTTGCGCAAGCGCAGTCCACGGAAAAAGATTGTAGATTTTGATCTTATCGAAGATGAAGACTTAAAAGTTGAGGAATTGTTGACCGAAGAcatggatgatgatgatgattactTGCCGcttaaaccaaaacaaaaaacggAGCTAAAAACTCAAGAAGAAACAAATATACCACCACCGGAGTTGGGCATGTCGGATAAACCCTTGCAAAATCAAACGACTACACAATGGTCTGATGACAGTGAAGATGAATATGTGCCAGATTTTGAGCCTGCCGATTCGGACACCGACGATGAGGAGGATAAAGCCCTAAACGATTTTAAAATACCTCTGCCTACAGCTGGTATTAAGCAGGAAAACTATGATGATGAGGATGATTTAGCCATAACTACCAATATACAAATAGAACCGCTGGGAGAGTTTGAATACACCCGCATGGATTCCTACACGGCTGAAGTGAAGTACGAAGATGAAAAGGATAATTTATTTGATGAAAAAGATCGCATACTAGAGCATTTGTTAAATGAAAATGATTATACGGCTTTGGAAGAGCTGCGGGAAGACAAATCATCACCAGagcaaataaaacgaaaaagagCTCGAAAAACTTGTGAATCAAAAGATAGTCAAGATACTGATGATATTCTGAAAGAGGCGGAAGTAgcctatataaaatatgaagacAGTGATGAGTTAGAAGAAGCGGGAGAAgatattttagaagaaaaatataagGCCATAGAAGCTACCCAGGATGACATTAAAGCGTGCTATGTTTTACTGGAAGATGTTAGCAACTGTTTTCCTGCCCTTAAAGAAGGTCCCAGCGTTAAAGTGCCACGCAACTTTCAACCTTTCTTCTCGAAATcggaaaaaatcaaaaaattcattaaaaagcgTGGCAAATATCGCCCTAGACGTCCCAAAGCCGAGCCTGGCTCTGATGAGGATAACAAGGCGGGTAAATCTTATCGTTTAGCTTCCATCTCAGCCAAGCAACTAAGAGAGCGCATGAAACTGTTGAAAAGACGCGATAAATCGTGGCAATGTGCTGACTGcattaaaatctattatatgCGAAAACCTTATGAAAAACATTTGCGTGATGATCACAAAAAGTCTGAGGAGTTCATCAAGGAAgtattcaaaaatgagttggaTGATGTACAGACCGATGATGTGTTCAAATGCCATATATGCGATAAAATTTACTTGATGGAAAAACGTTTACTATCCCACATACCCAAACATGGAGCAGATGGCAGTTTGATACATAAATGTCCCTGTTATTGTACTCTTTATTTTGCTACACGCGAGGAAGCTACTGCCCATGCTCATGACAAGCACAAAGACATGTTGTGGTGTGAAATTTGTGAGAAATTTATGACGGGCTGTGATGCTCTCAAATCCCATAAGGCACGCATACATGGCGGCAATAAGGATTATAAAAACAATCGTAATTTGATATGCATGAAATGTGGCAAGAAATTCTTGGGACGCACTCAATTGACGGACCATGAACGCTCAGATTGTGGTCGTTTGCCTTTGTATCAGTGTCAAGAGTGTGGCAAATGTTTAACCACGGCGGGTATTCTAAagactcacatgttattgcACAATGATGCACGGCCCTATCAGTGTGATAAGTGTGGTAAAACCTTTAAGATTAAGGCTCAATATAAAACACATATTAAATATGCCCATACAGATGAGAAGCGCTTTAAGTGTCATcttTGTCCCAAAGAATATCCTTATCGCGAGAGTCTTTTGACCCATATGTCGGTGCACACGGGCATCAAACGTTTCATGTGCAATGGCTGTGGCAAACGTTTTACTTGCGTTTCTAATCTACAAGCTCACCGCAAAGTACAGGCTGAATCTTGCGGCCAATTGCCTTTAAATGCCAAGGCCACCCAGTATATGGGTGTGCAAAAGGGCAATCTGTTAATGGGTGCCAAACCTGAACCCGGTTTGGATTATGTGGAAACCAGAACCTTTGTAGCCAAAGATGTTATAACACATGATTTGCCCATGGCCCAAGAACTCAACAATCAAGCGCGTAATATGCAACAAGACGGCTCCCTAAGTGATGGTGTACCCCTAAACTATGTAACCTCGGGATCTGAAATTATGCTAATGTATAATAGagattaa
Protein Sequence: MADASAASTSSAAAAAQQNMLVKLSTDGVPKLFCPICNKALVSLAGYVKHVKKHDPPGGFICRYCDSRFCSDEELKKHRETEHTTIACRLCKDTTFTNEDDYRSHIRDIHQGVDREIFTCEKCGAAYKTIDPYRRHMETECGRIKPYKCDKCQLAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYSCDVCGKSFSHRESIVTHSSIHTGIRLVECKGCTSRFSCYSNLIKHRRNRPDTCGLPQFDPPRNRIRKHTSRIPATLNPTSEIKVVNVNKIIKPDDQVKVANLKKESPNKPASSKPVKTKPTARKRTGPAPAPQTAPPTLRKRSPRKKIVDFDLIEDEDLKVEELLTEDMDDDDDYLPLKPKQKTELKTQEETNIPPPELGMSDKPLQNQTTTQWSDDSEDEYVPDFEPADSDTDDEEDKALNDFKIPLPTAGIKQENYDDEDDLAITTNIQIEPLGEFEYTRMDSYTAEVKYEDEKDNLFDEKDRILEHLLNENDYTALEELREDKSSPEQIKRKRARKTCESKDSQDTDDILKEAEVAYIKYEDSDELEEAGEDILEEKYKAIEATQDDIKACYVLLEDVSNCFPALKEGPSVKVPRNFQPFFSKSEKIKKFIKKRGKYRPRRPKAEPGSDEDNKAGKSYRLASISAKQLRERMKLLKRRDKSWQCADCIKIYYMRKPYEKHLRDDHKKSEEFIKEVFKNELDDVQTDDVFKCHICDKIYLMEKRLLSHIPKHGADGSLIHKCPCYCTLYFATREEATAHAHDKHKDMLWCEICEKFMTGCDALKSHKARIHGGNKDYKNNRNLICMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHNDARPYQCDKCGKTFKIKAQYKTHIKYAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAESCGQLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKDVITHDLPMAQELNNQARNMQQDGSLSDGVPLNYVTSGSEIMLMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261217;
90% Identity: iTF_00045514; iTF_00259980; iTF_00200078;
80% Identity: -