Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig136:167420-173426[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.014 0.57 10.3 0.1 3 23 34 54 32 54 0.96

2 17 0.007 0.29 11.2 2.0 1 23 60 83 60 83 0.95

3 17 0.11 4.7 7.4 0.3 3 23 88 110 86 110 0.88

4 17 0.0026 0.11 12.6 0.1 1 22 118 139 118 139 0.95

5 17 9.3e-06 0.00038 20.3 1.6 1 23 147 169 147 169 0.97

6 17 0.00011 0.0046 16.9 3.5 1 23 175 197 175 197 0.98

7 17 0.00015 0.0062 16.5 1.0 1 23 203 225 203 225 0.95

8 17 0.18 7.5 6.8 2.0 2 21 232 251 231 252 0.95

9 17 3.3 1.3e+02 2.8 0.2 2 23 669 691 668 691 0.93

10 17 0.3 12 6.1 0.6 1 10 715 724 715 737 0.79

11 17 3.1 1.3e+02 2.9 3.9 1 22 745 767 745 769 0.89

12 17 2 83 3.5 1.0 3 23 775 796 775 796 0.95

13 17 0.19 7.6 6.7 0.3 2 21 809 828 808 829 0.91

14 17 0.00019 0.0079 16.1 0.9 1 23 837 859 837 859 0.98

15 17 6e-06 0.00025 20.9 1.8 1 23 865 888 865 888 0.97

16 17 6.2e-05 0.0025 17.7 1.3 1 23 894 916 894 916 0.98

17 17 0.0004 0.016 15.1 1.1 1 21 922 942 922 943 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.014	0.57	10.3	0.1	3	23	34	54	32	54	0.96
2	17	0.007	0.29	11.2	2.0	1	23	60	83	60	83	0.95
3	17	0.11	4.7	7.4	0.3	3	23	88	110	86	110	0.88
4	17	0.0026	0.11	12.6	0.1	1	22	118	139	118	139	0.95
5	17	9.3e-06	0.00038	20.3	1.6	1	23	147	169	147	169	0.97
6	17	0.00011	0.0046	16.9	3.5	1	23	175	197	175	197	0.98
7	17	0.00015	0.0062	16.5	1.0	1	23	203	225	203	225	0.95
8	17	0.18	7.5	6.8	2.0	2	21	232	251	231	252	0.95
9	17	3.3	1.3e+02	2.8	0.2	2	23	669	691	668	691	0.93
10	17	0.3	12	6.1	0.6	1	10	715	724	715	737	0.79
11	17	3.1	1.3e+02	2.9	3.9	1	22	745	767	745	769	0.89
12	17	2	83	3.5	1.0	3	23	775	796	775	796	0.95
13	17	0.19	7.6	6.7	0.3	2	21	809	828	808	829	0.91
14	17	0.00019	0.0079	16.1	0.9	1	23	837	859	837	859	0.98
15	17	6e-06	0.00025	20.9	1.8	1	23	865	888	865	888	0.97
16	17	6.2e-05	0.0025	17.7	1.3	1	23	894	916	894	916	0.98
17	17	0.0004	0.016	15.1	1.1	1	21	922	942	922	943	0.95

Sequence Information

Coding Sequence: ATGGCCGACGCTAGCGCCGCCTCTACATCTTCAGCCGCTGCTGCAGCCCAACAAAACATGCTTGTCAAACTCTCCACGGACGGTGTGCCCAAGCTTTTCTGTCCCGTCTGCAACAAAGCCTTAGTATCTCTAGCCGGTTATGTGAAACATGTAAAGAAACATGATCCGCCCGGTGGTTTCATATGTCGGTATTGTGAGGCGCGTTTCTGTTCCGACGAGGAACTTAAAAAACATCGTGAATCCGAACACACCACCATAGCCTGCCGCCTGTGCAAAGATACCACTTTCACCAATGAAGATGATTACCGGTCACACATTAGAGACATACACCAGGGTGTGGATAGAGAAATATTTACGTGTGAAAAATGTGGGGCCGCCTACAAGACCATAGATCCCTATCGCCGGCATATGGAAACCGAGTGTGGCCGCATTAAGCCCTACAAATGTGATAAGTGCCAGATGGCTTTTGTGACGAAATACAATTTGAAACAGCATTTGGATAATCATTCGGGTGAATTGAAATTCTGCTGCAGCTATTGCGGGCGTAATTTTAAGCAAAAGGCCCGTTTGGTGGAACATGAGAGGACGCATACGGGTGAGAAGCCGTATAGTTGTGATGTTTGCGGAAAAAGTTTCTCCCATCGTGAAAGTATTGTAACACATTCTTCCATTCATACCGGCATACGTCTGGTAGAATGTAAGGGCTGCAGTTCCAGATTTTCTTGTTATTCTAATCTAATCAAGCATCGCAGAAATCGTCCAGATACCTGTGGCTTGCCGCAGTTTGATCCCCCCAGGAATCGCATTAGAAAACACACTTCAAGAATTCCGGCCACTTTAAATCCCACCTCCGAAATCAAAGTGGTGAAAGTGGCAAACCTTAAAAAAGAATCGCCCAACAAACCAGCCAGCAGCAAGCCTGTGAAAACAAAACCCACGGCCCGCAAACGTACGGGACCCGCACCCGCACCACCCACGCTGCGCAAGCGCAGTCCAAGGAAAAAGATAGTTGATTTTGATATTATCGAAGATGAAGACTTAAAAGTTGAGGACTTTATGGCCGAAGATATGGATGATGATGAGGATTACTTGCCGCTTAAAACGAAAGAAAAAACGGAGCTAAAAACTGCCGAAGAGACAAATATACTACCACCTGATAAACCCTTGCAAAATCAAACGACTACACAATGGTCTGATGACAGTGAGGATGAATATGTGCCAGATTTTGAGCCTGCCGATTCGGATACCGAAGATGAAGAGGATAAAGCCCTCAACGATTTTAAAATACCTCTGTCTACAGCTGGCATCAAGCAGGAAAACTATGATGATGAGGATGATGTAGCAATAACTACCAATATACAAATAGAACCTCTAGGAGAGTTTGAATACACCCGCATGGATTCCTACACGGCAGAAGTGAAATACGAAGATGAGAAGGATAATTTATTTGATGAAAAAGATCGCATACTAGAGCATTTGTTAAATGAAAATGATTATACGACTTTGGAAGAGCTACGAGAAGACAAATCATTACCCGAGCAAATAAAACGAAAGAGAGCACGTAAAACTTGTCAATCGAAAGATAGTCAAGAAACTGATGATATTTTGAAAGAGGCGGAAGTAGCCTATATAAAATATGAAGACAGTGATGAGGTGGAAGAACCGAGAGAAGATATTTTAGAAGAAAAATACAAGGCCATAGAAGCTACCCAGGATGACACTAAAGATTGCTATGTTTTACTAGAAGATGTTACTAACTGTTTTCCTGCCCTAAAAGAAGCTCCTAGCGTCAAAGTGCCTCGCAACTTTCAGCCTTTCTTCTCGAAATCGGACAAAATCAAGAAATTCATTAAAAAGCGTGGCAAATATCGCCCTAGACGTCCTAAAACCGAGCCTGGCTCTGATGAAGATAATAAAACGGGTAAATCTTATCGTTTAGCTTCCATCTCAGCCAAACAACTAAGAGAGCGCATGAAACTGTTGAAAAGACGCGATAAATCGTGGCAATGTGCCGACTGCATCAAAATCTATTATATGCGCAAACCTTATGAAAAGCATTTGCGTGATGATCACAAAAAATCGGAGGAGTTTATCAAGGAAGTGTTCAAAAATGAATTGGATGATGTGCAGACCGATGATGTGTTCAAATGCCATATATGCGATAAAATTTACTTGATGGAAAAACGTTTATTATCCCACATACCCAAACATGGAGCAGATGGCAGTTTGATACATAAATGTCCCTGTTATTGTACTCTGTATTTTGCAACACGCGAGGAGGCCACTGCCCATGCTCATGACAAGCACAAAGACATGTTGTGGTGTGAAATATGTGAGAAATTTATGACGGGATGTGATGCTCTCAAATCCCATAAGGCACGCATACATGGCGGCAATAAGGATTATAAAAACAATCGTAATTTGATATGCATGAAATGTGGCAAGAAATTCTTAGGACGCACTCAATTGACAGACCACGAACGTTCTGATTGTGGTCGTTTGCCATTGTATCAGTGTCAAGAGTGTGGCAAATGTTTAACCACGGCGGGTATACTGAAGACTCACATGTTATTGCACAATGATGCCCGGCCCTACCAGTGTGATAAGTGTGGTAAAACCTTTAAGATTAAGGCTCAATATAAAACACATATTAAATATGCCCATACAGATGAGAAGCGCTTTAAGTGTCATCTTTGTCCCAAAGAATATCCTTATCGCGAGAGTCTTTTGACCCATATGTCGGTGCACACGGGCATCAAACGTTTTATGTGCAATGGCTGTGGCAAACGTTTTACTTGTGTGTCTAATCTACAAGCTCACCGAAAAGTACAGGCTGAATCTTGTGGCCAATTGCCTTTAAATGCCAAGGCCACTCAGTATATGGGTGTGCAAAAGGGCAATCTGTTAATGGGTGCCAAACCTGAACCCGGTTTGGACTATGTGGAAACCAGAACCTTTGTAGCCAAAGATGTTATAACACATGATTTGCCCATGGCCCAAGAACTCAACAATCAAGCCCGTAATATGCAACAAGACGGCTCCCTAAGTGATGGTGTACCCCTAAACTATGTAACCTCGGGATCTGAAATTATACTCATGTATAATAGAGATTAA
Protein Sequence: MADASAASTSSAAAAAQQNMLVKLSTDGVPKLFCPVCNKALVSLAGYVKHVKKHDPPGGFICRYCEARFCSDEELKKHRESEHTTIACRLCKDTTFTNEDDYRSHIRDIHQGVDREIFTCEKCGAAYKTIDPYRRHMETECGRIKPYKCDKCQMAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYSCDVCGKSFSHRESIVTHSSIHTGIRLVECKGCSSRFSCYSNLIKHRRNRPDTCGLPQFDPPRNRIRKHTSRIPATLNPTSEIKVVKVANLKKESPNKPASSKPVKTKPTARKRTGPAPAPPTLRKRSPRKKIVDFDIIEDEDLKVEDFMAEDMDDDEDYLPLKTKEKTELKTAEETNILPPDKPLQNQTTTQWSDDSEDEYVPDFEPADSDTEDEEDKALNDFKIPLSTAGIKQENYDDEDDVAITTNIQIEPLGEFEYTRMDSYTAEVKYEDEKDNLFDEKDRILEHLLNENDYTTLEELREDKSLPEQIKRKRARKTCQSKDSQETDDILKEAEVAYIKYEDSDEVEEPREDILEEKYKAIEATQDDTKDCYVLLEDVTNCFPALKEAPSVKVPRNFQPFFSKSDKIKKFIKKRGKYRPRRPKTEPGSDEDNKTGKSYRLASISAKQLRERMKLLKRRDKSWQCADCIKIYYMRKPYEKHLRDDHKKSEEFIKEVFKNELDDVQTDDVFKCHICDKIYLMEKRLLSHIPKHGADGSLIHKCPCYCTLYFATREEATAHAHDKHKDMLWCEICEKFMTGCDALKSHKARIHGGNKDYKNNRNLICMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHNDARPYQCDKCGKTFKIKAQYKTHIKYAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAESCGQLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKDVITHDLPMAQELNNQARNMQQDGSLSDGVPLNYVTSGSEIILMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261217;
90% Identity: iTF_00259113;
80% Identity: -