Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288235.1:5286121-5293718[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.13 12 7.6 1.3 1 23 253 276 253 276 0.91

2 26 5.9e-05 0.0052 18.1 2.6 1 23 282 305 282 305 0.97

3 26 0.0063 0.55 11.7 0.9 2 23 335 356 334 356 0.96

4 26 0.0043 0.38 12.3 1.3 1 23 433 456 433 456 0.96

5 26 0.34 30 6.3 0.2 2 23 464 485 463 485 0.96

6 26 0.0035 0.31 12.5 0.8 2 23 531 552 530 552 0.96

7 26 0.076 6.6 8.4 1.8 2 20 565 583 564 586 0.94

8 26 0.0052 0.45 12.0 2.2 1 23 665 688 665 688 0.94

9 26 0.0025 0.22 13.0 0.2 1 21 695 715 695 716 0.95

10 26 0.12 11 7.7 0.8 2 23 728 750 727 750 0.94

11 26 0.00041 0.036 15.5 0.4 2 23 765 786 764 786 0.97

12 26 1e-06 9e-05 23.7 3.7 1 23 792 814 792 814 0.98

13 26 7.1 6.2e+02 2.1 2.3 2 23 846 867 845 867 0.86

14 26 1.2 1e+02 4.6 1.9 1 23 958 982 958 982 0.96

15 26 8 7e+02 2.0 1.3 1 23 1019 1042 1019 1042 0.92

16 26 0.0025 0.22 13.0 2.4 1 23 1052 1075 1052 1075 0.97

17 26 0.005 0.44 12.1 3.7 1 23 1082 1104 1082 1104 0.97

18 26 0.049 4.3 8.9 0.1 2 19 1131 1148 1130 1150 0.94

19 26 0.0019 0.17 13.4 5.0 1 23 1206 1229 1206 1229 0.97

20 26 0.11 9.8 7.8 0.3 1 23 1266 1289 1266 1289 0.95

21 26 0.076 6.6 8.3 6.2 1 23 1321 1344 1321 1344 0.97

22 26 7e-07 6.1e-05 24.2 0.8 2 23 1372 1393 1371 1393 0.95

23 26 7.3e-06 0.00064 21.0 0.4 1 23 1399 1421 1399 1421 0.99

24 26 6.9e-05 0.0061 17.9 3.0 1 23 1427 1449 1427 1449 0.98

25 26 6.1e-06 0.00053 21.2 2.3 1 23 1455 1477 1455 1477 0.99

26 26 0.029 2.6 9.6 0.7 1 22 1483 1504 1483 1507 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.13	12	7.6	1.3	1	23	253	276	253	276	0.91
2	26	5.9e-05	0.0052	18.1	2.6	1	23	282	305	282	305	0.97
3	26	0.0063	0.55	11.7	0.9	2	23	335	356	334	356	0.96
4	26	0.0043	0.38	12.3	1.3	1	23	433	456	433	456	0.96
5	26	0.34	30	6.3	0.2	2	23	464	485	463	485	0.96
6	26	0.0035	0.31	12.5	0.8	2	23	531	552	530	552	0.96
7	26	0.076	6.6	8.4	1.8	2	20	565	583	564	586	0.94
8	26	0.0052	0.45	12.0	2.2	1	23	665	688	665	688	0.94
9	26	0.0025	0.22	13.0	0.2	1	21	695	715	695	716	0.95
10	26	0.12	11	7.7	0.8	2	23	728	750	727	750	0.94
11	26	0.00041	0.036	15.5	0.4	2	23	765	786	764	786	0.97
12	26	1e-06	9e-05	23.7	3.7	1	23	792	814	792	814	0.98
13	26	7.1	6.2e+02	2.1	2.3	2	23	846	867	845	867	0.86
14	26	1.2	1e+02	4.6	1.9	1	23	958	982	958	982	0.96
15	26	8	7e+02	2.0	1.3	1	23	1019	1042	1019	1042	0.92
16	26	0.0025	0.22	13.0	2.4	1	23	1052	1075	1052	1075	0.97
17	26	0.005	0.44	12.1	3.7	1	23	1082	1104	1082	1104	0.97
18	26	0.049	4.3	8.9	0.1	2	19	1131	1148	1130	1150	0.94
19	26	0.0019	0.17	13.4	5.0	1	23	1206	1229	1206	1229	0.97
20	26	0.11	9.8	7.8	0.3	1	23	1266	1289	1266	1289	0.95
21	26	0.076	6.6	8.3	6.2	1	23	1321	1344	1321	1344	0.97
22	26	7e-07	6.1e-05	24.2	0.8	2	23	1372	1393	1371	1393	0.95
23	26	7.3e-06	0.00064	21.0	0.4	1	23	1399	1421	1399	1421	0.99
24	26	6.9e-05	0.0061	17.9	3.0	1	23	1427	1449	1427	1449	0.98
25	26	6.1e-06	0.00053	21.2	2.3	1	23	1455	1477	1455	1477	0.99
26	26	0.029	2.6	9.6	0.7	1	22	1483	1504	1483	1507	0.90

Sequence Information

Coding Sequence: ATGTCCAGTAATGTTAAAAACGAATGTTTTATAAATGGAGTACGCTACAAATGTCGTACTTGCTTTGATCCGGGAAGAACAGTCTACTCCCTTGCAGATGACGCATGCAACACAAAAACTTGGCGTGATTTATTAAAGGATATTACTCCATCACAGACGAATGATGAAGATTTGCTGCCAAATACTATGTGCTGCAAATGCTCGGGAAAACTTAAAAGTTCCTATGAATTTATTCTTCAGATTCAtaatgtgaataaaaaatacTCCCAATTATTGGCTTGTAATGATCCACTCCAGGAGATTGAAAATTTGTCCGACTGTTTGGCAGAATCCACTATTGATTTGCCATTGGAGCAGTATATACCGGAAATTAAACTGGAGGAAGATCTCGTTGATCcatataataatgatttaagtAACACAGTACCAGTCAGTAAATCAAAATTGGAAAGTGAAGTTTCTCATGATTCCTTGAGGGAATGTTTTAATGATGAACTCAACTCAACAACAGACCATTTAATACAGCAAAAAAGGGATAATTTAAAATCCAGGCACAACAGTTTTGAAGATGACAATGATGACTATAGAAATGAATGCAGcTCTACATCGTCTGATGAAAGTGACTATGTgcctttgaaaaaatttaagaaagaaAAGGCGAATAATAGCAGTTGTAGTAGTAgCCAACCGGTCAAACAGAAAAAAGGCCGGAAAGCCCCTGATTATTATGATAAAATCGAAAAAGTTAATGATCGTTTCGTATGCCTCATTTGCCAAAAAACATTTTCTCTACGAAAAGATTGTGGTCGACATATAGCTTCGATACACTTGCGACACACCATGTTTCCTTGTGAATTTTGTGGACAAAGCTTTAGCCGTAAAGACAAGATACAACACCACATTAAACGCATGCATTCAGATGGAGTAGTGTATCCGGCAAAACATAAAGAATGGCTATTTGGAGATCGTTTGTACAGCAAGCCTATTGCGTGGCATCTTGTAGAGTGTAAATTGTGTGATACTCAATTTCAAACAACTAAAGATCTTCGTCAGCACCTAGAAAATCACAGTGATGTTGATACCCTTCATAACTTAGAATTAAGCGATAATATTATCAAACATTTGTTTCCAAATATGATTGATTTAAATATGGTGAAGGAAAGTATATGCAATGATATTCGCGAGAAACAATGGTTCAAATATTACACAGTGTTAAATGAACACTCTTACGAAATGTGTGTTAGTGATACGGAAGCCGAAGATTTAGAAGAAGACACTGCAGAGAGTGTCAGCAAATACAAGTGTGATTTGTGTGCTAAAgagttttcatttaaataccaagttttttctcatttaaaagagGTCCATGGTAAGGATGAAATACCTTTGAAATGTGGCCTATGTAAATTGGAGtttatttccataaaaatgTACGAACAGCATGCAAAAATTCACTGCCGTAATAGGCATAAAGTTTTGCTTTGTGCACATTGTCCCGCTAAGTTTGTTTGgcctaaaaatatgaaaaatcacAATTGTGCCGCCAAAATACTTGCGACCCCACAGGTTGCTGCTAAAAAAGATCAACTAATATGTAATGTATGTGATCGCAAATTTGAAGTGAAGACTAAATACCTAAAGCACTTGGATACACATAGTGATGGCAGAACTGTATCTTCAAAAACTATAATACGTTGTGGTCTTTGTGCACATTCTTTCGATAAACTTCGACATTTGCGCAGACACATGCCTTTACATGCTGATGGCAAAACTGGCATTGATTTTATAGgcagtatttatataaaacgaTTTGAACGTGCAAAATCAATTGATTATGCACTACTGCAGCAGGAGATACAAAATGCGTATAGTAAATCTCAAATTAGTCGGTTTTATCGAGCCATCGATAAGGACGGCAACGAATTGGACATTTTAGATTCGGATAGTGGAGCAGAGGAAACGGACGTTGAtggtgaaaatataaaaaaagaatacgCCTGCGAACTTTgcaaagaagtgtttaaaaaacgaaaacttCTATTAAACCATCAACATGAACGGCACAATGATGTGCCATTGCCCTTCCCGTGTAAGGACTGCACACAGCAATATGTTAGTAATGATTTGTTACAACAACATTTAATGAGGGATTGCTGGAATGAACATCGACGAATAGCTCAACAATGCGATCATTGTAATGCTCGTTTTATATGGCCTAATAATCTGTTGAAACATAAAGAAATTCAGcataaaaatcaaaagtattcaaGACCTCAAAGAGCCAGCACTCTCAAGTGTGAGTACTGTGAAAAGGTATTTATATGGCCCAAGGATTTAGTGCGACATAGGAAAACTCACACTGAAGGTAAAAAATTCACGTGTCCTCACTGTGATCGTAAATTCCACCGCAAAGACAATTTACTGGCTCACATACGAATACATTGTCCTGATGGTATTCCCACAGTCTCAAATCCTGGTAAAAGTATTGACTACATACTGCCACATTTAATAAAACCTCACGGCTGCAAACGCATCAAATGCATGATCTGTTTTTCCGAACACAGTCGCATACGCGACTTAAGGTCCCACTTACGTACACATCGCTATTCGGTTAATTTcgataaaagaaaagaaattgaaaCTATTGACGTAATATCATCTCAGCTCTATCCCGATGAACCGGTATCTTTGGCAGAAGAGGAACTAGTGAAACGGATTGGTTCAGACATTGTGGCGGAAAACTATTTGGAACGTTTTTACTCCATAACAAGTGAGAACGGTTGCGAAgttagtttagatagctctgaAACTGAAAGCGATTCGGATGATAACGAAAGCGGCGATGAAGGCGATATAAAATCGAAACGTGTTTACAAGTGTGATTTATGTCCTCAATTGAGTTTTAATCGTAAATATAGAATTTTCGATCATCAAAATAAACAACATAAGTGGGAAGAAGCTCGCCACATTTGTATACACTGCAATGGTCGATTTCTTTCATCATATTTGCTACAATTACACTATAAGAATCaatgtaaaaattcaaaaaaacgaCACTTTTGTCGACGTTGTCCCTTGCGTTTCATGTGGAAAAATAATATGAAGGCTCATATTGTAATGGAACATGGACAagagatCGAATTAAATCACCGCCATGAATGTTTTCTATGCCAAGAAAAGTTCTCCATTCAAAAGGAACTCAAACGTCATTTGATCACCCAACATTCCGCCGATGCTGCACTTCATTATTGTCTGCTATGCCCCAAAACATTCTTCAGTATTGAACATCTCAATGAACATTTAAATCGCCATCGATTGACAACAGCCGATGTCAAGACCGTTGAAAGTATAATACATTCCACCTGCTGGCCAAATGGTGAAAAGTCaattaaatgcaaaatatgTGGACTAATATTTCAAACAATGACCAACTTAAGTGAACATTTCTCACCAAGAAATCCTCAGAACTTGTGTGCCAACCAACATTCACTGGCAAACTACTCAATTACAAATCAAAAAGGATTCGAGCTGCATTTAGAACTGGATTCTGAAACTGAAGTAGAAGATGAAGTTGAAGCGGGTCATAATAAAGATAGTAAAAGATCTTTATATCCCTACAATTGCTGCATGTGTAGTATGTCATTTAAGCGGAAATATCAAATGGCTCAACATCAGCGTTCTATGCACAATTATGAAGTGCTGGAGCTAAAATGTGAACGTTGTATTTTCAGAACAGTCTCACAGaaagttCTAGACTATCATAAAGCCACGCAGTGTTTTAATGTTGAAAAACAATACGAATGCGAtcagtgtaattttaaatttatgtggcAAGAAAATCTTGATAACCATATTGCCATATTTCATACTCCAAATGATTTGGCGAAACCAACGGACGTCGTTAAGACGGTGGCTTCTAATGAACCTATACCAACCAACAATAAAAGCGATAACAATATTTTCGAATGTATGGACTGTCACCGAAGATACAATCGAAAAGATCGTTATAAAGCTCATTTTAAAAAGTTCCACAATGATATGGAACCAACGTCGGTCAACATTCCCAAGTCAAAAGTTCGCAAACATCCCACACCGAAGAtggaaaagaaatttttatgcGCCTTTTGTGGCCTCTCCTTTTCTAACAATTCTAATCTTACGGTACACATGAGAAGGCACACGGGAGAGAAACCTTTCAAGTGTGACCTTTGCGAAATGGCTTTTCCACGTACATCCGATTTACAGGCTCACCGACGAACACACACCGGAGAACGTCCCTTCAAATGTATGTTTTGCGAGAAATCATTTTCGCGacaatacaaattaaatgttCACAATCGCATACACACGGGTGAGCGTCCCTACCAGTGCACGTTTTGTCAAAAATCATTTATACAATCGAACGATTTAACACTACATTTACGTCGCCATACGGGCGAAAGACCCTATATGTGTGATATTTGCGGCGAGGGCTTTATATGTGCCACATCTCTTAAGCAGCATCGTAACTCAAAAGGTCATCAGGAAGAAAAAATggatttaaaaatgtgtgtgcaACAGTTGACGCAGTTCGATATGAAATTCTAA
Protein Sequence: MSSNVKNECFINGVRYKCRTCFDPGRTVYSLADDACNTKTWRDLLKDITPSQTNDEDLLPNTMCCKCSGKLKSSYEFILQIHNVNKKYSQLLACNDPLQEIENLSDCLAESTIDLPLEQYIPEIKLEEDLVDPYNNDLSNTVPVSKSKLESEVSHDSLRECFNDELNSTTDHLIQQKRDNLKSRHNSFEDDNDDYRNECSSTSSDESDYVPLKKFKKEKANNSSCSSSQPVKQKKGRKAPDYYDKIEKVNDRFVCLICQKTFSLRKDCGRHIASIHLRHTMFPCEFCGQSFSRKDKIQHHIKRMHSDGVVYPAKHKEWLFGDRLYSKPIAWHLVECKLCDTQFQTTKDLRQHLENHSDVDTLHNLELSDNIIKHLFPNMIDLNMVKESICNDIREKQWFKYYTVLNEHSYEMCVSDTEAEDLEEDTAESVSKYKCDLCAKEFSFKYQVFSHLKEVHGKDEIPLKCGLCKLEFISIKMYEQHAKIHCRNRHKVLLCAHCPAKFVWPKNMKNHNCAAKILATPQVAAKKDQLICNVCDRKFEVKTKYLKHLDTHSDGRTVSSKTIIRCGLCAHSFDKLRHLRRHMPLHADGKTGIDFIGSIYIKRFERAKSIDYALLQQEIQNAYSKSQISRFYRAIDKDGNELDILDSDSGAEETDVDGENIKKEYACELCKEVFKKRKLLLNHQHERHNDVPLPFPCKDCTQQYVSNDLLQQHLMRDCWNEHRRIAQQCDHCNARFIWPNNLLKHKEIQHKNQKYSRPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFHRKDNLLAHIRIHCPDGIPTVSNPGKSIDYILPHLIKPHGCKRIKCMICFSEHSRIRDLRSHLRTHRYSVNFDKRKEIETIDVISSQLYPDEPVSLAEEELVKRIGSDIVAENYLERFYSITSENGCEVSLDSSETESDSDDNESGDEGDIKSKRVYKCDLCPQLSFNRKYRIFDHQNKQHKWEEARHICIHCNGRFLSSYLLQLHYKNQCKNSKKRHFCRRCPLRFMWKNNMKAHIVMEHGQEIELNHRHECFLCQEKFSIQKELKRHLITQHSADAALHYCLLCPKTFFSIEHLNEHLNRHRLTTADVKTVESIIHSTCWPNGEKSIKCKICGLIFQTMTNLSEHFSPRNPQNLCANQHSLANYSITNQKGFELHLELDSETEVEDEVEAGHNKDSKRSLYPYNCCMCSMSFKRKYQMAQHQRSMHNYEVLELKCERCIFRTVSQKVLDYHKATQCFNVEKQYECDQCNFKFMWQENLDNHIAIFHTPNDLAKPTDVVKTVASNEPIPTNNKSDNNIFECMDCHRRYNRKDRYKAHFKKFHNDMEPTSVNIPKSKVRKHPTPKMEKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRTHTGERPFKCMFCEKSFSRQYKLNVHNRIHTGERPYQCTFCQKSFIQSNDLTLHLRRHTGERPYMCDICGEGFICATSLKQHRNSKGHQEEKMDLKMCVQQLTQFDMKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259362;
90% Identity: iTF_00259946;
80% Identity: -