Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288235.1:117393826-117397400[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.011 0.97 11.0 0.1 2 23 201 223 200 223 0.93

2 21 0.0001 0.0087 17.4 1.8 1 23 229 251 229 251 0.99

3 21 1.8e-06 0.00016 22.9 1.1 1 23 257 279 257 279 0.98

4 21 5.6e-07 4.9e-05 24.5 2.5 3 23 287 307 285 307 0.96

5 21 1.3 1.1e+02 4.5 4.0 1 23 313 335 313 335 0.93

6 21 0.017 1.5 10.4 2.0 1 23 341 363 341 363 0.98

7 21 8.1e-05 0.007 17.7 6.6 1 23 369 391 369 391 0.98

8 21 0.0003 0.026 15.9 7.3 1 23 397 420 397 420 0.97

9 21 0.017 1.5 10.4 5.2 2 23 529 551 528 555 0.96

10 21 0.00042 0.037 15.4 1.3 1 23 557 579 557 579 0.98

11 21 0.0001 0.009 17.4 3.3 1 23 585 607 585 607 0.98

12 21 0.0014 0.12 13.8 3.1 1 23 613 636 613 636 0.97

13 21 0.041 3.5 9.2 5.0 1 23 642 665 642 665 0.97

14 21 0.0016 0.14 13.6 1.2 1 23 754 777 754 777 0.95

15 21 0.011 0.93 11.0 1.4 1 23 783 805 783 805 0.98

16 21 4.4e-06 0.00038 21.7 0.2 1 23 811 833 811 833 0.98

17 21 2.1e-06 0.00018 22.7 2.0 3 23 841 861 839 861 0.95

18 21 0.13 11 7.7 2.5 1 23 867 889 867 889 0.94

19 21 0.0085 0.74 11.3 0.7 1 23 895 917 895 917 0.97

20 21 3.9e-06 0.00034 21.8 5.5 1 23 923 945 923 945 0.98

21 21 0.00014 0.012 16.9 2.9 1 23 951 974 951 974 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.011	0.97	11.0	0.1	2	23	201	223	200	223	0.93
2	21	0.0001	0.0087	17.4	1.8	1	23	229	251	229	251	0.99
3	21	1.8e-06	0.00016	22.9	1.1	1	23	257	279	257	279	0.98
4	21	5.6e-07	4.9e-05	24.5	2.5	3	23	287	307	285	307	0.96
5	21	1.3	1.1e+02	4.5	4.0	1	23	313	335	313	335	0.93
6	21	0.017	1.5	10.4	2.0	1	23	341	363	341	363	0.98
7	21	8.1e-05	0.007	17.7	6.6	1	23	369	391	369	391	0.98
8	21	0.0003	0.026	15.9	7.3	1	23	397	420	397	420	0.97
9	21	0.017	1.5	10.4	5.2	2	23	529	551	528	555	0.96
10	21	0.00042	0.037	15.4	1.3	1	23	557	579	557	579	0.98
11	21	0.0001	0.009	17.4	3.3	1	23	585	607	585	607	0.98
12	21	0.0014	0.12	13.8	3.1	1	23	613	636	613	636	0.97
13	21	0.041	3.5	9.2	5.0	1	23	642	665	642	665	0.97
14	21	0.0016	0.14	13.6	1.2	1	23	754	777	754	777	0.95
15	21	0.011	0.93	11.0	1.4	1	23	783	805	783	805	0.98
16	21	4.4e-06	0.00038	21.7	0.2	1	23	811	833	811	833	0.98
17	21	2.1e-06	0.00018	22.7	2.0	3	23	841	861	839	861	0.95
18	21	0.13	11	7.7	2.5	1	23	867	889	867	889	0.94
19	21	0.0085	0.74	11.3	0.7	1	23	895	917	895	917	0.97
20	21	3.9e-06	0.00034	21.8	5.5	1	23	923	945	923	945	0.98
21	21	0.00014	0.012	16.9	2.9	1	23	951	974	951	974	0.97

Sequence Information

Coding Sequence: atgaattatCCACATAAAACATGTTTAACATGCCTTTGTAAATCAACGGAAGCCCAAACCCTTAATCATATTCTACTGGataatcttaaaatattggagATACTATACAAAATTGTTCCCATACTTTCGGAAAGTCAAGAAATCACACTGCCGGAATGGATATGTACACAATGTTTGGACAAATTGGTAGTAGCTTATACATTTCAAAAACAATGTTTAGATTCGGTACAAAGTTTATATGATTTGTGGACGAAAAATCCTACACAAAAGGAGAGCGATGAACATGATGTATATAAACAGGAAGTTGAACTTGAGGATAAAGAAGATCTTAGTGATGATgagtataaaattaaatcactGAACGAAAATAAAGATTTTGCTGAAATACAATTTGAAGAAATTACAATGCAATCTTTACCTGAAACTAAGGAAGATCTAGAAATACCATTTTATCAAAGTGATGATGAAGAAGACAGTTTAAATGATGAATTGGAAAGTAAAGAAAACGGATCTGAAAGCCCACTAACATTACAGCAAACCACTCAGTCCGAAAATATTGATGAGCTTAAAAATGACTTACTGCAATCAAATGAATCAGTTCCATGTaaagtatgtaaaaaaatatataaaaatcctcAAGGATTAGCTTTACATGAAACTAAAGCCCATTATAAAGATTGTCCATACAAATGTGACAAATGTGATAAAGGTTTTGTTACCGAGGAATTCTACATAAAACACCGAAATCGTCACTTAGgcataaaagcttttaaatgtcCCCATTGCGATAAAGCTTTTGATGTGAATAGTACCTTAAATCAGCATTTAATCTCCCATTCTAAAGAGACTCCTCATTTATGTACAATTTGTGGCAAACGTTTCAATCGTTCTGGCAATTTACAACAGCATATGCTGCGCCATGGAGATGAAAAACCCTTCCAATGTTCAGCATGTCCCAAAAGCTTCAAGTGCTTAACTGATCATATTTCTCACATGCGGATACATGACAAACATAAGCGTTATGAATGTAATATTTGTGGTGTACGCTTAGCCTCACATACATCTATGAAGCATCATAAACTTGTACACACGGGAGAGAAACCCTTCAAATGTGATGATTGTGATAAGTGttttaactcCATAACTAACATGAGACGCCACCATAGACTACATACTGGTGAAAAACCCTATAAATGTGAATATTGTGAAAAAGATTTTTGCCAAAGCAATGATctgaaaaaacataaaagacATATGCATAAGAATGAAATTGTAAGTGagaaaaaagaggaaaataatgTACAAAAGCAGAACCAGCAAGTTAATTTAAAACAGGAATCTAAGGACGTTGAACACAACGAAAATGAAGATCATAGAAAGGATGAAGAAACAATCGAAAGTctaactaaaattaaagaaactaCTGAAATACCCTTGTATCAAAGTGAAGGTGTAAAAGagaatttggaaaataataaaaatggtaTGGATAACCAACAACAACTAATATTACTTCAAAACACCCAGTCCGAAAATATTAAAGAACCTGAAAATGAGTCCATGACGACATCGATGAAATCAAATCAATGTAAACTATGtaaaaaagtattcaaaaataCTCATGGACTAGCTGTGCATAATaagaaaacacatttaaaaaagcatttaTACAAATGTGATAAATGTGATAAAGGTTTTGATTCAGAGGAATTCTACATAAAACACTATAATCTTCATTTAGGTATTAAACCTTTTCAATGTAACCAATGCGAAAAAGcttTTGAATCTAGGTATTGCTTAAAGCAACATTTAATCAGTCATTCTAAAGAGTCTCCATATTCATGTACAATTTGTGGCAACAATTTCCGtcgtaaaagtattttaaaacagcaCCACCAAAGAATACATATGggtgaaaaaccgcataaatgtCGCCATTGTATTCGAGCTTTTAGTCTAGAAAGTGATCTGAAAAAGCATACGAAACGTGTACATAAAAATGAAAAGGGTGAAGAATCGAGTGATGATAATGAAGAACAGTATGCTCAGCATGTTGAACTTGCTGGAAATAAACAATATAGTGAAGAAGAAGATACTAGGGAATCTCTAGCTGAAAATAAGGAAGATGTTaagaaagaaattgaaaaaactgAAGCTAGTGAAGATACATTAAATGATGTATTGGATGATAATGAAAATGAATCTGACAACCAACTTCTTATAGAGCTAAAAACGGTCCCAAAAACCGCCAAAGAATCACATCAATGTAAActatgtaaacaaatatttaaaaatccccAAGGATTAGCGGCGCATAAAACTAaagcacatttaaaaaaatatttatacaattgtGATAAATGTGAGAGAGGTTTTGATTCGGAGGAATtctatataaaacacaaaaatcgcCATTTGGGCATAAAAACTTTTAAGTGTCCCCAATGCGGTAAAGCTTTTGATGCGAATAGTACCTTAAATCAGCATTTAATTTCCCATTCCAAAGAGACGCCTCATCTCTGTACAATTTGTGGCAAAAGTTTTAATCGTTCTGGTACCTTAAGACAGCATATACTACGCCATGGCGATGATAAACCATTTCAGTGCTCATTTTGTCCTAAACGTTTCAAGTGTCTCTCCGATCAAATTATACATTTGTCGATACATAAAAAGGAAAAGCGTTATGTGTGCAAAATTTGTGGTGTACGCTTGGCTACCTCTACATCCATGTCCCATCATAAACTTGTTCACTCGGGCGAGAAACCCTTTGAATGTGATCATTGTGGTAAATGTTTCAATTCCCTGTCTAATATGAGAAGCCACAGGAGAATACATACGGGTGAAAAACCTTATAGTTGTCAATACTGTGAGAAAACGTTTCGCCAAAGCAATGATCGCAATAAACATGCCAGACGTATGCATAAGAAGGAAATGGGCCTTACGAAATCTGAGTTCAGTGAAGAGAACGAAGAGCAGAAAGCATAA
Protein Sequence: MNYPHKTCLTCLCKSTEAQTLNHILLDNLKILEILYKIVPILSESQEITLPEWICTQCLDKLVVAYTFQKQCLDSVQSLYDLWTKNPTQKESDEHDVYKQEVELEDKEDLSDDEYKIKSLNENKDFAEIQFEEITMQSLPETKEDLEIPFYQSDDEEDSLNDELESKENGSESPLTLQQTTQSENIDELKNDLLQSNESVPCKVCKKIYKNPQGLALHETKAHYKDCPYKCDKCDKGFVTEEFYIKHRNRHLGIKAFKCPHCDKAFDVNSTLNQHLISHSKETPHLCTICGKRFNRSGNLQQHMLRHGDEKPFQCSACPKSFKCLTDHISHMRIHDKHKRYECNICGVRLASHTSMKHHKLVHTGEKPFKCDDCDKCFNSITNMRRHHRLHTGEKPYKCEYCEKDFCQSNDLKKHKRHMHKNEIVSEKKEENNVQKQNQQVNLKQESKDVEHNENEDHRKDEETIESLTKIKETTEIPLYQSEGVKENLENNKNGMDNQQQLILLQNTQSENIKEPENESMTTSMKSNQCKLCKKVFKNTHGLAVHNKKTHLKKHLYKCDKCDKGFDSEEFYIKHYNLHLGIKPFQCNQCEKAFESRYCLKQHLISHSKESPYSCTICGNNFRRKSILKQHHQRIHMGEKPHKCRHCIRAFSLESDLKKHTKRVHKNEKGEESSDDNEEQYAQHVELAGNKQYSEEEDTRESLAENKEDVKKEIEKTEASEDTLNDVLDDNENESDNQLLIELKTVPKTAKESHQCKLCKQIFKNPQGLAAHKTKAHLKKYLYNCDKCERGFDSEEFYIKHKNRHLGIKTFKCPQCGKAFDANSTLNQHLISHSKETPHLCTICGKSFNRSGTLRQHILRHGDDKPFQCSFCPKRFKCLSDQIIHLSIHKKEKRYVCKICGVRLATSTSMSHHKLVHSGEKPFECDHCGKCFNSLSNMRSHRRIHTGEKPYSCQYCEKTFRQSNDRNKHARRMHKKEMGLTKSEFSEENEEQKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259939; iTF_00045474;
90% Identity: iTF_00259939;
80% Identity: -