Agra007185.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig212:79060-82975[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.045 1.9 8.7 0.9 2 23 201 223 200 223 0.92 2 21 3.2e-05 0.0013 18.6 1.6 1 23 229 251 229 251 0.99 3 21 1.6e-05 0.00067 19.5 0.8 1 23 257 279 257 279 0.98 4 21 1.8e-06 7.5e-05 22.5 2.5 3 23 287 307 285 307 0.96 5 21 0.14 5.7 7.1 4.9 1 23 313 335 313 335 0.94 6 21 0.01 0.41 10.7 2.2 1 23 341 363 341 363 0.98 7 21 6.1e-05 0.0025 17.7 6.6 1 23 369 391 369 391 0.98 8 21 0.00023 0.0093 15.9 7.3 1 23 397 420 397 420 0.97 9 21 0.013 0.53 10.4 5.2 2 23 534 556 533 560 0.96 10 21 0.00073 0.03 14.3 1.3 1 23 562 584 562 584 0.98 11 21 7.8e-05 0.0032 17.4 3.3 1 23 590 612 590 612 0.98 12 21 0.0023 0.095 12.7 2.4 1 23 618 641 618 641 0.97 13 21 0.0096 0.39 10.8 3.2 1 23 647 670 647 670 0.97 14 21 0.0012 0.05 13.6 1.2 1 23 753 776 753 776 0.95 15 21 0.0058 0.24 11.5 1.5 1 23 782 804 782 804 0.98 16 21 3.3e-06 0.00013 21.7 0.2 1 23 810 832 810 832 0.98 17 21 1.5e-06 6.2e-05 22.7 2.1 3 23 840 860 838 860 0.95 18 21 0.095 3.9 7.7 2.5 1 23 866 888 866 888 0.94 19 21 0.00092 0.038 14.0 0.6 1 23 894 916 894 916 0.98 20 21 5.3e-07 2.2e-05 24.2 3.9 1 23 922 944 922 944 0.99 21 21 0.00011 0.0044 16.9 2.9 1 23 950 973 950 973 0.97
Sequence Information
- Coding Sequence
- ATGAATTATCCACACAAAACATGTTTAACATGCCTTTGTAAATCTACGGAAGCCCAAACCCTTAATCATATTCTACTAGATAATCTTAAAATATTGGAGATACTATACAAAATTGTTCCCATACTTTTGGAAAATCAAGAAATCTCACTTCCTGAATGGATATGTGCACAATGTTTGGATAAATTGGTCGTAGCTTATACATTTCAAAAGCAATGTTTAGATTCGGTACAAAGTTTATATGATTTGTGGTCGAAAAATGCTACACAAAAGGAGAGCGACGAACATGATGTATATAAACAGGAAGTTGTACTTGAAGATATTAAAGATCTTAGTGATGATGAGTATAAAATTACATCAGTGACCGAAAATAAAGATTTTGCTGAAATACAATTTGAAGAAATTACAATGCATTCTTTGCCTGAAACTAAGGAAGATCTAGAAATGCCATTTTATAAAAGTGATGATGAAGAAGATAATATAAGTGATGATTTGGAAAGTAATGAAAATGGATCTGAAAGCGAACTAACAATACAGCAAACGACTCAAGCTGAAAATATAGACGAGCTCAAAAATGACTTAATACAATCTAGTGAATCAATTCCATGTAAATTATGTAAAAAAATATGCAAAAATCCTCAAGGATTAGCTTTACATGAAACTAAATCCCATTATAAAGACTGTCCATATAAATGTGACAAATGTGATAAAGGTTTTGTTACAGAGGAATTCTACATAAAACACCAAAATCGTCACTTAGGCATAAAAGCTTTTAAGTGTTCTCAATGCGATAAAGCTTTTGATCTGAATAGTACCTTAAATCAACATTTAATCTCCCATTCTAAGGAGACTCCTCATTTATGTACAATTTGTGGTAAACGTTTTAATCGTTCTGGCACTTTACAGCAGCATATGCTGCGGCATGGTGATGAAAAACCCTTCCAATGCTCAGTATGTCCTAAAAGCTTCAAGTGCTTAACTGATCATATTTCTCATATGCGGTCACATAATAAACAAAAGCGCTATGAGTGTAATATTTGTGGTGTACGCCTAGCCACACATACATCTATGAAGCATCACAAACTTGTACATACAGGAGAGAAACCCTTCAAATGTGATGATTGCGATAAGTGTTTTAACTCCATAACAAACATGAGACGCCACCATAGACTACATACTGGTGAAAAACCCTATAAATGTGAATATTGTGAAAAAGATTTTTGTCAAAGCAATGATCTGAAAAAACATAAAAGACATATGCACAAGAATGAAAATGTAAGTGAAAAAAAAGATGAAAAGTGCTGGGATAATCATTTAGAAAAGCAGAGCCAGCAAGTTAAGCATAAACAGGAAGCTAAGGATGTTGTACACGATGAAAATGAATATCATAATGAGGATGATGATGGTGAAACAATTGCATCTGTAACTAATATTAAAGATGTTCAAGAAATACCCTTGTATCAAAGAGAAGGTGTAAAAGAGAAATTGGAAAATAATAAAAATGGTGTGGAAAAAGATCATCAACTAACATTACTTCAAAACACACAATCCGAAAACAATAACGAACCCGAAAATGAGCCCTTGACATCGATGAAATCAAATCAATGTAAACTATGTAAAAAAGTATTCAAAAATACTCATGGACTAGCTGTGCATAATAAGAAAACACATTTAAAAAAGCATTTATACAAATGTGATAAATGTGATAGAGGTTTTGATTCAGAGGAATTTTATATAAAACACTATAATCTTCATTTAGGTATAAAACCTTTTCAATGTAATCAATGCGAAAAAGCTTTTGAATCTAGGTATTGCTTAAAGCAACATTTAATCAGTCATTCTAAAGAGTCTCCATATTCATGTACAATTTGTGGCAATAACTTCCGTCGTAAAGGTATTTTAAAGCAGCACCACCAAAGAATACATATCGGTGAAAAACCGCATAAATGTCGGTATTGTATACGAGCTTTTAGTCTAGAAAGTGATCTAAAAAAGCATACGAAACGTGTACATAAAAATGAAAAGAGTGAAGAAGCTAGTGATGATAATGAAGAACAGGATGCTGAGCAAGTTGAGCTTGCCGCAAATAAACAGTATACTGATGAAGAAGATACAAGGGAATCTCCAGCTGAAAATAAGGAAGATGTTAAGAAAGCAATTGTACAAACTGACGCTGTATTGAATGATGTATTGGATAATAATGAAAATGAAACAGACAACCAACTACTTATAGAGCTGAAAACGGTCGCAAAAACCACGCATCAGTGTAAACTATGTAAACAAATATTTAAAAATCCTCAAGGATTAGCTGCGCATAAAACTAAAGCACATTTAAAAAAATATTTTTACAATTGTGATAAATGTGAGAGAGGTTTTGATTCGGAAGAATTCTTCATAAAACACAAAAACCGTCATTTGGGCATAAAAACTTTTAAGTGTCCCCAATGCGGTAAAGCGTTTGATGCGAATAGTACCTTAAACCAGCATTTAATTTCCCATTCCAAAGAGACGCCTCATCTCTGTACAATTTGTGGCAAAAGTTTTAATCGTTCTGGTACCTTAAAGCAGCATATACTACGTCATGGTGATGATAAACCCTTTCAGTGCTCATTTTGTCCTAAACGATTCAAGTGTCTCTCTGATCAAATTATACATTTGTCGATACATAAAAAGGAAAAGCGTTATGTGTGTAAAATTTGTGGTGTTCGCCTGGCGACCTCTACATCCCTGTCGCACCATAAACTTGTTCACTCGGGCGAGAAACCCTTTAAATGTGATCATTGTGGTAAAAGTTTCAATTCCCTGTCTAATATGAGAAGCCACAGGAGAATACATACGGGTGAAAAACCTTATAGTTGTCAATACTGTGAGAAAACGTTTCGCCAAAGCAATGATCGGAACAAACATGCCAGGCGTATGCATAAGAAGGAAATGGGCCTTACGAAATCTGAGTACAGTGAAGAGAAAGAAGAGCAGAATGTATAA
- Protein Sequence
- MNYPHKTCLTCLCKSTEAQTLNHILLDNLKILEILYKIVPILLENQEISLPEWICAQCLDKLVVAYTFQKQCLDSVQSLYDLWSKNATQKESDEHDVYKQEVVLEDIKDLSDDEYKITSVTENKDFAEIQFEEITMHSLPETKEDLEMPFYKSDDEEDNISDDLESNENGSESELTIQQTTQAENIDELKNDLIQSSESIPCKLCKKICKNPQGLALHETKSHYKDCPYKCDKCDKGFVTEEFYIKHQNRHLGIKAFKCSQCDKAFDLNSTLNQHLISHSKETPHLCTICGKRFNRSGTLQQHMLRHGDEKPFQCSVCPKSFKCLTDHISHMRSHNKQKRYECNICGVRLATHTSMKHHKLVHTGEKPFKCDDCDKCFNSITNMRRHHRLHTGEKPYKCEYCEKDFCQSNDLKKHKRHMHKNENVSEKKDEKCWDNHLEKQSQQVKHKQEAKDVVHDENEYHNEDDDGETIASVTNIKDVQEIPLYQREGVKEKLENNKNGVEKDHQLTLLQNTQSENNNEPENEPLTSMKSNQCKLCKKVFKNTHGLAVHNKKTHLKKHLYKCDKCDRGFDSEEFYIKHYNLHLGIKPFQCNQCEKAFESRYCLKQHLISHSKESPYSCTICGNNFRRKGILKQHHQRIHIGEKPHKCRYCIRAFSLESDLKKHTKRVHKNEKSEEASDDNEEQDAEQVELAANKQYTDEEDTRESPAENKEDVKKAIVQTDAVLNDVLDNNENETDNQLLIELKTVAKTTHQCKLCKQIFKNPQGLAAHKTKAHLKKYFYNCDKCERGFDSEEFFIKHKNRHLGIKTFKCPQCGKAFDANSTLNQHLISHSKETPHLCTICGKSFNRSGTLKQHILRHGDDKPFQCSFCPKRFKCLSDQIIHLSIHKKEKRYVCKICGVRLATSTSLSHHKLVHSGEKPFKCDHCGKSFNSLSNMRSHRRIHTGEKPYSCQYCEKTFRQSNDRNKHARRMHKKEMGLTKSEYSEEKEEQNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259069;
- 90% Identity
- -
- 80% Identity
- -