Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000555.1:109409-112947[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.034 1.7 9.5 1.0 2 23 200 222 199 222 0.93

2 21 0.0001 0.0051 17.4 1.8 1 23 228 250 228 250 0.99

3 21 1.9e-06 9.1e-05 22.9 1.1 1 23 256 278 256 278 0.98

4 21 2.5e-06 0.00012 22.5 2.5 3 23 286 306 284 306 0.96

5 21 0.1 5 8.0 5.1 1 23 312 334 312 334 0.97

6 21 0.018 0.89 10.4 2.0 1 23 340 362 340 362 0.98

7 21 8.4e-05 0.0041 17.7 6.6 1 23 368 390 368 390 0.98

8 21 0.0006 0.029 15.0 8.0 1 23 396 419 396 419 0.97

9 21 0.018 0.88 10.4 5.2 2 23 531 553 530 557 0.96

10 21 0.001 0.049 14.3 1.3 1 23 559 581 559 581 0.98

11 21 0.00011 0.0053 17.4 3.3 1 23 587 609 587 609 0.98

12 21 0.0048 0.23 12.2 2.4 1 23 615 638 615 638 0.97

13 21 0.013 0.65 10.8 3.2 1 23 644 667 644 667 0.97

14 21 0.0017 0.084 13.6 1.2 1 23 756 779 756 779 0.95

15 21 0.011 0.55 11.0 1.9 1 23 785 807 785 807 0.98

16 21 4.5e-06 0.00022 21.7 0.2 1 23 813 835 813 835 0.98

17 21 2.1e-06 0.0001 22.7 2.1 3 23 843 863 841 863 0.95

18 21 0.13 6.4 7.7 2.5 1 23 869 891 869 891 0.94

19 21 0.0089 0.44 11.3 0.7 1 23 897 919 897 919 0.97

20 21 4.1e-06 0.0002 21.8 5.5 1 23 925 947 925 947 0.98

21 21 0.00023 0.011 16.3 2.9 1 23 953 976 953 976 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.034	1.7	9.5	1.0	2	23	200	222	199	222	0.93
2	21	0.0001	0.0051	17.4	1.8	1	23	228	250	228	250	0.99
3	21	1.9e-06	9.1e-05	22.9	1.1	1	23	256	278	256	278	0.98
4	21	2.5e-06	0.00012	22.5	2.5	3	23	286	306	284	306	0.96
5	21	0.1	5	8.0	5.1	1	23	312	334	312	334	0.97
6	21	0.018	0.89	10.4	2.0	1	23	340	362	340	362	0.98
7	21	8.4e-05	0.0041	17.7	6.6	1	23	368	390	368	390	0.98
8	21	0.0006	0.029	15.0	8.0	1	23	396	419	396	419	0.97
9	21	0.018	0.88	10.4	5.2	2	23	531	553	530	557	0.96
10	21	0.001	0.049	14.3	1.3	1	23	559	581	559	581	0.98
11	21	0.00011	0.0053	17.4	3.3	1	23	587	609	587	609	0.98
12	21	0.0048	0.23	12.2	2.4	1	23	615	638	615	638	0.97
13	21	0.013	0.65	10.8	3.2	1	23	644	667	644	667	0.97
14	21	0.0017	0.084	13.6	1.2	1	23	756	779	756	779	0.95
15	21	0.011	0.55	11.0	1.9	1	23	785	807	785	807	0.98
16	21	4.5e-06	0.00022	21.7	0.2	1	23	813	835	813	835	0.98
17	21	2.1e-06	0.0001	22.7	2.1	3	23	843	863	841	863	0.95
18	21	0.13	6.4	7.7	2.5	1	23	869	891	869	891	0.94
19	21	0.0089	0.44	11.3	0.7	1	23	897	919	897	919	0.97
20	21	4.1e-06	0.0002	21.8	5.5	1	23	925	947	925	947	0.98
21	21	0.00023	0.011	16.3	2.9	1	23	953	976	953	976	0.97

Sequence Information

Coding Sequence: ATGAATTATCCATATAAAACATGTTTAACATGCCTTTGTAAATCTACGGAAGCCCAAACCCTTAATAATATTCTACTAGATAATCTTAAAATATTGGAGATACTATACAAAATTGTTCCCATACTTTTGGAAAATCAAGAAATCTCACTGCCGGAATGGATATGTGCACAATGTTTGGATAAATTGGTCGTAGCTTATAAATTTCAAAAGCAATGTTTAGATTCGGTACAAAATTTATATGATTTGTGGTCGAGAAATCCTACGCAAAAGGAGACCGATGAACATGAGCTATACAAACAGGAAGTTGAAATTGAAGATAATGAAGATCTTAGTGATGAGTATAAAATTAAATCACTGACCGAAAATAAAGATTTTGCTGAAATACAATTTGAAGAAATTACAATGCATTCTTTACCTGAAACTAAGGAAGATCTAGAAATACCATTTAATCAAAGTGATGATGAAGAAGACAGTTTAAATGATGAATTGGAAAGTAATGAAAATGGATCTGAAAGCCAACCAACATTACAGCAAACGACTCAGTTCGAAAATATTGACGAGCTTAAAAATGGCTTAACGCAATCAAATGAATCAGTTGAATGTAAAGTATGTAAAAAAATATGTAAAAATCCTCAAGGATTAGCTTTACATGAAACTAAATCCCATTATAAAGATTGCCCATACAAGTGTGACAAATGTGATAAAGGTTTTGTTACCGAGGAATTCTACATAAAACACCGAAATCGTCACTTAGGCATAAAAGCTTTTAAGTGTCCCCATTGCGATAAAGCTTTTGATGTGAATAGTACCTTAAATCAACATTTAATCTCCCATTCTAATGAGACTCCTCATTTATGTACAATTTGTGGCAAACGTTTTAATCGTTCTGGCACTTTGCAACAGCATATGCTGCGCCATGGGGACGAAAAACCCTTTCAATGCTCAGTATGTCCCAAAAGCTTCAAGTGCTTAACTGATCATATTTCTCACATGCGGACACATGACAAACTCAAGCGCTATGAATGTAATATTTGTGGTGTACGCTTAGCCTCACATACATCTATGAAGCATCATAAACTTGTACATACGGGAGAGAAACCCTTCAAATGTGATGATTGTGATAAGTGTTTTAACTCCATAACTAACATGAGGCGCCACCATAGACTACATACTGGTGAAAAACCCTATAAATGTCAATACTGTGAGAAAGATTTTTGCCAAAGCAATGATCTGAAAAAACATAAAAGACATATGCATAAGAATGAAATTGTAAATGAGAAAAAAGAGGAACAGAGCTTGGAAACTCATTTAGAAAAGCAGAGCCAGCAAGTTAAGTTGAAACAGGAAGCTAAGGATGCTGAACACAACGAAAATGAAGATCATAATGAGGATGAAGAAACAATCGAATCTGTAACTAAAATTAAAGAAGTTTCAGAAAAACCCGTGTATCAAAATGAAGGTGTAAAAGAGAAATTGGAAAATAATAAAAATGGTATGGAAAGCCACCAACAACTTACATTACTTCAAAACACCCAGTCCGAAAATATTAAAGAACCCGAAAATGAGTCCACGACATCGATGAAATCAAATCAATGTAAACTATGTAAAAAAGTATTCAAAAATACTCATGGATTAGCTGTGCATAATAAGAAAACACATTTAAAAAAGCATTTATATAAATGTGATAAATGTGATAGAGGTTTTGATTCAGAGGAATTCTACATAAAGCACTATAATCTTCATTTAGGTATAAAACCTTTTCAATGTAACCAATGCGAAAAAGCGTTTGAATCTAGGTATTGCTTAAAGCAACATTTAATCAGTCATTCTAAAGAGTCTCCATATTCATGTACAATTTGTGGCAGCAACTTCCGTCGTAAAGGTATTTTAAAACAGCACCACCAAAGGATACATATAGGAGAAAAACCGCATAAATGTCGGTATTGTATTCGAGCTTTTAGTCTAGAAAGTGATCTGAAAAAGCATACGAAACGTGTACATAAAAATGAAAAGAGTGAAGAATCGAGTGATGATAATGAAGAACAGGATGCTGAGCAAGTTGAACTTGCCGGAAATAAAAATTATAGTGATGAAGAAGATACAATGAAATCTTCGGCTGAAAATAAAGAAGATGTTAAGAAAGCAATTGAACAAACTGAAGCTGGTGAAGATACATTCAATGATGTATTGGGTAATAATGAAAATGAAACTGACAACCAATTACTTATAGAGCTTAAAAAGGTTACAAAAACCACGATAGAATCGCATCAATGTAAACTATGTAAACAAATATTTAAAAATCCTCAAGGATTAGCGGCGCATAAAACTAAAGCACACTTAAAAAAATATTTATACAATTGTGATAAATGTCAGAGAGGTTTTGATTCGGAAGAATTCTACATAAAACACAAAAATCGCCATTTAGGCATAAAAACTTTTAAGTGTCCCCAATGCGGTAAAGCTTTTGATGCGAATAGTACCTTAAATCAGCATTTAATTTCCCATTCCAAAGAGACGCCTCATCTCTGTACAATTTGTGGCAAAAGTTTTAATCGTTCTGGTACCTTAAAACAGCATATATTAAGGCATGGCGATGATAAACCCTTTCAATGCTCATTTTGTCCTAAACGATTCAAGTGTCTCTCTGATCAAATAATACATTTGTCGATACATAAAAAGGAAAAGCGTTATGTGTGTAAAATTTGTGGTGTACGCTTGGCTACCTCTACCTCCATGTCGCATCATAAACTTGTTCACTCGGGCGAGAAACCCTTTGAATGTGATCATTGTGGTAAATGTTTCAATTCTCTGTCTAATATGAGAAGCCACAGGAGAATACATACGGGTGAAAAACCTTATAACTGTCAATACTGTGAGAAAACGTTTCGCCAAAGCAATGATCGAAATAAACATGCCAGACGTATGCATAAGAAGGAAATGGGCCTTACGAAATCTGAGTTCAGTGAAGAGAACGAAGAGCAGATAGTATAA
Protein Sequence: MNYPYKTCLTCLCKSTEAQTLNNILLDNLKILEILYKIVPILLENQEISLPEWICAQCLDKLVVAYKFQKQCLDSVQNLYDLWSRNPTQKETDEHELYKQEVEIEDNEDLSDEYKIKSLTENKDFAEIQFEEITMHSLPETKEDLEIPFNQSDDEEDSLNDELESNENGSESQPTLQQTTQFENIDELKNGLTQSNESVECKVCKKICKNPQGLALHETKSHYKDCPYKCDKCDKGFVTEEFYIKHRNRHLGIKAFKCPHCDKAFDVNSTLNQHLISHSNETPHLCTICGKRFNRSGTLQQHMLRHGDEKPFQCSVCPKSFKCLTDHISHMRTHDKLKRYECNICGVRLASHTSMKHHKLVHTGEKPFKCDDCDKCFNSITNMRRHHRLHTGEKPYKCQYCEKDFCQSNDLKKHKRHMHKNEIVNEKKEEQSLETHLEKQSQQVKLKQEAKDAEHNENEDHNEDEETIESVTKIKEVSEKPVYQNEGVKEKLENNKNGMESHQQLTLLQNTQSENIKEPENESTTSMKSNQCKLCKKVFKNTHGLAVHNKKTHLKKHLYKCDKCDRGFDSEEFYIKHYNLHLGIKPFQCNQCEKAFESRYCLKQHLISHSKESPYSCTICGSNFRRKGILKQHHQRIHIGEKPHKCRYCIRAFSLESDLKKHTKRVHKNEKSEESSDDNEEQDAEQVELAGNKNYSDEEDTMKSSAENKEDVKKAIEQTEAGEDTFNDVLGNNENETDNQLLIELKKVTKTTIESHQCKLCKQIFKNPQGLAAHKTKAHLKKYLYNCDKCQRGFDSEEFYIKHKNRHLGIKTFKCPQCGKAFDANSTLNQHLISHSKETPHLCTICGKSFNRSGTLKQHILRHGDDKPFQCSFCPKRFKCLSDQIIHLSIHKKEKRYVCKICGVRLATSTSMSHHKLVHSGEKPFECDHCGKCFNSLSNMRSHRRIHTGEKPYNCQYCEKTFRQSNDRNKHARRMHKKEMGLTKSEFSEENEEQIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259069;
90% Identity: iTF_00259069;
80% Identity: -