Cvic001262.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vicina
Gene Symbol
PAXBP1
Assembly
GCA_958450345.1
Location
OY288232.1:17474124-17481271[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-29 3.1e-25 90.3 0.6 2 272 650 859 649 861 0.95

Sequence Information

Coding Sequence
aTGTCGCTTTTTCGCAaacccaaaaaaatacaaagacgAGTTTTTTCAAGCACGTTGGATGATGATGAGGACGCCAATGGTGGTGGCAGTAATGCATCTGCCAAAGATTCACGAAAATCCAATGATGATGAAATGGATGTAGATAATAATGGCGATCTTATAGCACCGCCTCCACCACAAATATCAGCAAAATCGGAGAAAAAAAAGAGTAAGGATAGTAAATCAAAAGCGTCTACAAGCAAAAAAGAAGTTGTTGGAGGAGGAGGTGTTGGGGATGTGGGTAAAACGAAGGCTCTATTAAGTTTTGCAGATGAAGaggAAGATGCCGAAGTGTTTCAAGTTCGTAAGTCATCACACAGCAAAAAAGTTATGCGTATGTTGGACAAGGAACGTAGACGTAAAAAGAAGGAAGAACGTAGTTCTGATAACTTttccagcagcagcagcagtagcaaTATCAACAACACAACTAGTACCAATGACACCCATCATAGTAACCATCAAAATAGGGAACGTGAAAATGGGTCACGTAATAGTAATTCTCATAATTTAGGTTCATCTTCGACGTCAACACATACAACTAGTTCTTCGGAACATAGTAAAAGTAATAAAAGTGATAAAATCCAAACAGAAATACGCACAGACGACTTTGTGCTGGTGGTGAAAAAATCTGAACCGGAGATAATTTTAAATGGTCGTGCCGCCCTGTGTGCTGGCCGCAATGACTTGTCTGATGAAGATCAAGAACAAAGTGATAATGATCGTGATGACAGCAAACATAGATTTGCAAAACCAGatcatttaaaacaaatgttgGAAAGCGGTTCTATACCCGATGCGGCCATGATACATGCAGCCCGCAAGAGAAGACAAAAGGCCAGGGAGCAAGGTGATTTCATAACCATAGAGGAACCTAAGGTGGAAACTAAAAAGGGTAGCCGTTTGGCCAGAGAAGATATAGAGGGCGATAACTCGGATGATGAGGAACGTGTGGATATGAATGCTATAACTGGCATCAAGGAACGCGAAGAAAGACGTGAAAAATTCTATGCTGTTGAAAAAGATTATTCTGAGGAAGACTCAGATTGTGAAACCCATGAATGGGAAAATCAACAGATTCGTAAAGGTGTAACAGGTGCTCAATTGGTTAATGCTCAACATGAATCGGTCTTGTCGCGTTTCATGATTAAATCGACTATGGAAAATGCTTTGGAAGGTCCTCCACAACCCCAGACTACATCCTCTTTACTGGAGCAAGCCTATGCTAAGTGTACATTGGAGAAGCCTCAGCAAATCTTAAATGCCAACAAACCCAAGAAGGATAAAACCAAAGCTACCGTTCTGAGATCTCCCCAAGAGATACGTAATGCTATAGGAGAGCGTTTGAATAAATTAAAGGAACTAAATACAAATCATTTGGAGGATATCGAGAGAATTGACAGGGAAATGCAAGCCATGAAATTAGAGGAAATGGATTGTAAACAAAAAGCTCCCACAGCAGCTgcaaaatatagattttatcaAGAAATTAAGTGCTATGTTACTGATTTAATAGACTGTCTCAATGAAAAGtcaCCCATAATAGTGGATTTGGAGAAACGTTGTCTACAATTCTTTGGCAAACATCAGCACTTCTTAATAGATCGCCGAAGACAGGATGTGCGAGATCAGGCCAAGGAAATGGCTGATGCAGCCAAACCTTCTTCCACACGTCGTGGTGATGAGTATGACGAACAGGTACGCCGTGCTGCCGAACGTGAGGGTAGACGTACTAGACGTCGTTGTGAACGTGAACGTCAAGATACTTTAAGTTCACATTTAGATGGCATGTCTTCAGATGAGGAAACTTCCGATCGTTATCAAGAATTATTTCAAACTGAATTAGAAGAACTTATTAAGGAGGGCTTGGAAATTATGAACGATGTTACCgatgaatttagtaaaattgATATAATTTTAACGAAGTTCTATGCCTGGCGTAAAACTGATATGCCTTCCTATAAAGATGCTTTTGTGAGCTTGTGTTTGCCAAAGATTCTTGGACCTCTGATACGACTTGAAATGTTGACATGGTCACCTTTGTTGGCCGATTTTAAAGATATCGAGAAACTGAATTGGTACTCAGCAGCCATGCTTTATGCTTGGAGCGAAGATGAGACAGAGGAATCGCTTAAACAAGATCCTGATGTTAATTTGGTGCCCACACTGCTAGAGAAAATAATTCTACCCAAATTAATAGATATAGTGACACATTGTTGGGATCCTTTATCCACTACACAATCATTACGTTTGATTGGTTTCATAAATCGTTTGGGTCGTGATTTTCCTTTAAAAGAAGAGGGCAAGACATTGCAACAATTGTTTAATGCCATTTTAGAGAAAATGAAATTGGCCTTGGAGAATGATGTTTTCATACCCATATTTCCCAAACAGGTGCAAGAAAACAAGACCTCATTCTTTCAGCGTCAATTTTGCAGTGGTTTAAAACTGTTTCGTAACTTTTTATCATGGCAGGGCATTATAGCCGATACACCTTTAAGGGAAATGGCTATAGGATCTCTACTTAATCGTTATTTATTATTAGCTATGAGGgTTTGCACACCCAACGATGCTATAAGCAAAGCTTATATTATTGTCAACACTTTACCGACCGTCTGGCTACAGCCAGATTCtgaatgtttaaaaaacttacAATTACTTATAACTTACATTAAACAGACTTTAGAATCCTGTGATGCTAACAATCCCTTATTTATgcAAACTAGTGATAAGGCCAAACAAATCTTACAAAGACTTCAtagtaataattaa
Protein Sequence
MSLFRKPKKIQRRVFSSTLDDDEDANGGGSNASAKDSRKSNDDEMDVDNNGDLIAPPPPQISAKSEKKKSKDSKSKASTSKKEVVGGGGVGDVGKTKALLSFADEEEDAEVFQVRKSSHSKKVMRMLDKERRRKKKEERSSDNFSSSSSSSNINNTTSTNDTHHSNHQNRERENGSRNSNSHNLGSSSTSTHTTSSSEHSKSNKSDKIQTEIRTDDFVLVVKKSEPEIILNGRAALCAGRNDLSDEDQEQSDNDRDDSKHRFAKPDHLKQMLESGSIPDAAMIHAARKRRQKAREQGDFITIEEPKVETKKGSRLAREDIEGDNSDDEERVDMNAITGIKEREERREKFYAVEKDYSEEDSDCETHEWENQQIRKGVTGAQLVNAQHESVLSRFMIKSTMENALEGPPQPQTTSSLLEQAYAKCTLEKPQQILNANKPKKDKTKATVLRSPQEIRNAIGERLNKLKELNTNHLEDIERIDREMQAMKLEEMDCKQKAPTAAAKYRFYQEIKCYVTDLIDCLNEKSPIIVDLEKRCLQFFGKHQHFLIDRRRQDVRDQAKEMADAAKPSSTRRGDEYDEQVRRAAEREGRRTRRRCERERQDTLSSHLDGMSSDEETSDRYQELFQTELEELIKEGLEIMNDVTDEFSKIDIILTKFYAWRKTDMPSYKDAFVSLCLPKILGPLIRLEMLTWSPLLADFKDIEKLNWYSAAMLYAWSEDETEESLKQDPDVNLVPTLLEKIILPKLIDIVTHCWDPLSTTQSLRLIGFINRLGRDFPLKEEGKTLQQLFNAILEKMKLALENDVFIPIFPKQVQENKTSFFQRQFCSGLKLFRNFLSWQGIIADTPLREMAIGSLLNRYLLLAMRVCTPNDAISKAYIIVNTLPTVWLQPDSECLKNLQLLITYIKQTLESCDANNPLFMQTSDKAKQILQRLHSNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00975604;
90% Identity
iTF_00199873; iTF_01259204; iTF_01194408; iTF_01261000; iTF_00922098; iTF_00259763; iTF_00921427; iTF_00045343;
80% Identity
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