Csim011910.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951812925.1
- Location
- OX638368.1:104413504-104433539[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.5e-104 9.6e-100 335.0 29.1 1 300 30 331 30 331 0.89 2 3 0.39 5.7e+03 -2.4 3.2 135 157 365 387 336 415 0.53 3 3 1.5 2.2e+04 -4.4 0.0 234 266 871 903 870 907 0.81
Sequence Information
- Coding Sequence
- ATGGATAGCAGTATCGCAGGTAGACGTCGAACCAGTTCATCCCGTGTCAATGCTGAGGATCAAGCACTCGACCAAATCGCCAAGGAGGCGGAAGCGCGACTGGCGGCACGCCGGCAGGCCCGTGCTGAGGCGCGCGAAGTTCGAATGCGCGAATTGGAACGTCAGCAAAAGAAACAAGAACAGAATGCGGatcgtgtttttgatattgGCAATGAACCGATGGCCCGCTCACGCATAGTTGCTAGTCTAAGTACTGGTGGATGTGGTGGCAGCAACAGTTTTTCTGTGACACGCGCCAGTTCAATGTCCTCTCGGCGCAGCAGTGAAGACTCTCTGCAAGATGATGAGGCGGCGGCTGCTGGACGTAGCTTTCGTGATTTGCGTCATGAACTACGAGATGCAGAAGAACGCTTTCGAAAAGTTATGATTGCTAACGCTCAACTAGATAATGAATGCGCTTCCCAAGTGTATCAGATCCAGTTGCTCAAAGATAAACTAGAAGAGGTCATTGAATCATATGCGTTGTTGCAGCGtgaatttaaggaaaaaaatagagATTGCAATGCTCTCAAACGAAATGTGGAAAAATTGCACGAGGAACTAAAGTTGGTTCAAGGCCAATTGGAGGAACGCGACAAGCTCATCACGGAACAGGGTTTGGTTGTTATCTTGGTAGAAAATGAAGATGGCACAGATGCCAAGCGTGCTCTAGTCAGTATAGATAATGCACAAACATTAAATTCTGTGCAAGGTTCTCTAGATATGCGactgaaaaaattcaatgagGAGAAGCAACACCTCTTAGCTGAGGTACAAAGTTTACAGCAGCAGTTGGACGGTTATAGACAACAAAAAAGTAAGGGCCGTCGTGGTAGTAGCACCATTAATGGTCACGGATCAAGTGATGAGGAGTACGATGTACAACGCGAAACGAATAAAATGTTATCAgattataaatacaaattgcAAAAAGCAGAACAAGAAGTTGCTACTTTACAGGCCAGTTTAGCAAGATCAGAAACGCAAGTTATACGTTACAAGAGTACATCAGAGGCAGCAGAGAAAGCAGAGGCTGAACTAAAAATTGAAAGGAGAAAACTGCAACGAGAAAATCGAGAAGCAATGGAACGTTTAGAAGAATTAGAAACGTCAAATAACCACCTGCTTAAGCGTCTGGACAAATTAAAGAATGCAAAAATTCACATAAATATTCCAAAAGAACAACAAGATTTCTTAGACAAACTAACTCtagaagatttcaaaaaatttgttcaacttGGAACTGAATCAGATGATCGAGAGACAAGATGGGAGGAAAACCTTCAAAATTCGGCTATAACTGTACATAATGGAACCTTATCACATAGTCAATTGTTAGAAACATGGCCGAGCTTGGAGGCTCAGGCAGACAGTGATATTGCcacaaaaatactaaaatcGAGCCTTTATATATATAATTCGAAATGTATCGAACATGGTATTAGTGGTGATAACTGTCGCATATACTTTGCAAAGAAATCAATCCCAGAAGATACGGAATTAGGACGTTCGTGTAAGAAAATACTTGAGGCTCCAAGAGAAGGACATCATGCCTTGCGTCGACTATTGCCTTGTAAATATGAAGATGGATTTTATGCGatGTATTCGGACAGTAAACTGCCATCTGCACGACTGGTAAGTAGCAGTGCACTACATGGCCATAGCACAAATGTACAAAGTGGTAATGAAGCTCTAGATGATGGACAAAGGAGCTTAACTTTAGTCCAGTGGACACAATTTATAGAGCACGATTTGAGTAAAACTGTTGCTACTTCTATGGATAATGGCAATTCCATTGATTGCTGTAATCGTGACAACTTTAAACTACAACCGCGTTTTCTTCATCCGGCCTGTGCTCCACTCATAGCAAAGGACAAGTATGGCAGAGAAAGTTGTCTGAATTATGTGCGCAGTGCTTTGGCACTGAGTTCGAACTGTAATTTTGGTGCTGCCCAACAGttAAACGAAGCAACGGGTTACCTCGATTTATCTCAACTTTATGGTTATACAAGCGATGCACAGCGGCGAATGCCTGCGGGGGAACGTAACGCATTTTGTTCTCTTAAAATCGACAGTAATGAAACATGTTATATGGCTGGAGATTCACGTGTCAATAGCAATCCGTTTTCAATTGTTTTATACACGATCTTTTTACGATCACACAATCAATTGGCAGAGAATTTACATCAGCAGCACAATGACTGGAACGATGATCGTCTGTATAATGCAGCTAAAGcattaaatattgatatatATCGGCGTATTGTGTTCAACGAGTGGTTACCAGCGGTCTTGGGTCAGCAATTGGCAAATCAAATAAACGCCGAATCTATCCAACAGCAAAGAGAAACATTAAATGTTCAAACCTCTGAATTACAAATATCAAATGAATTTGCAATTGCTGCTATACGTTTCTATTTCTCCATGATGCCAAATGCACTTAATGATTTTGCTACTACTTCAAATTTGGCCAATAATATCCGTAAAGGTTATACGCAATATTCTATAAGTAATAGtaaCGTTTCGCCCACACCAAATATTTACCCACTTCAAGATCATGTTTATAATTCAGAAATTGTATCGAATCCCCAACAGTTGAACAAAGTACTGGAATCAATACTGCATCAGCGAGCAATGAAAATGGATTCGTCGTATGCCGAGAGCTTTATTCAAGATTATATGGGCACACCACATCTTAATGGCTTAGATGTTTTAGCTTTTGATATTCAACGAGGTCGTGACCATGGTATTCAGGGCTATGTCAAATATTTAGAGCAGTGTCAAGGAATAAGCATAAAGTCTTGGACAGATTTAGAGCGTTATATTCATTTTAGCGACAATAATAAATTGAAGTCAGCTTATAATGATTGGAACGATATCGACTTAATAATAGGCGGTATCTCAGAAAAGCCTTTGGGTGATTCAATTGTTGGTCCCACATTCACTTGCATTTTGGGTAAGTCAATTGAATGA
- Protein Sequence
- MDSSIAGRRRTSSSRVNAEDQALDQIAKEAEARLAARRQARAEAREVRMRELERQQKKQEQNADRVFDIGNEPMARSRIVASLSTGGCGGSNSFSVTRASSMSSRRSSEDSLQDDEAAAAGRSFRDLRHELRDAEERFRKVMIANAQLDNECASQVYQIQLLKDKLEEVIESYALLQREFKEKNRDCNALKRNVEKLHEELKLVQGQLEERDKLITEQGLVVILVENEDGTDAKRALVSIDNAQTLNSVQGSLDMRLKKFNEEKQHLLAEVQSLQQQLDGYRQQKSKGRRGSSTINGHGSSDEEYDVQRETNKMLSDYKYKLQKAEQEVATLQASLARSETQVIRYKSTSEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKIHINIPKEQQDFLDKLTLEDFKKFVQLGTESDDRETRWEENLQNSAITVHNGTLSHSQLLETWPSLEAQADSDIATKILKSSLYIYNSKCIEHGISGDNCRIYFAKKSIPEDTELGRSCKKILEAPREGHHALRRLLPCKYEDGFYAMYSDSKLPSARLVSSSALHGHSTNVQSGNEALDDGQRSLTLVQWTQFIEHDLSKTVATSMDNGNSIDCCNRDNFKLQPRFLHPACAPLIAKDKYGRESCLNYVRSALALSSNCNFGAAQQLNEATGYLDLSQLYGYTSDAQRRMPAGERNAFCSLKIDSNETCYMAGDSRVNSNPFSIVLYTIFLRSHNQLAENLHQQHNDWNDDRLYNAAKALNIDIYRRIVFNEWLPAVLGQQLANQINAESIQQQRETLNVQTSELQISNEFAIAAIRFYFSMMPNALNDFATTSNLANNIRKGYTQYSISNSNVSPTPNIYPLQDHVYNSEIVSNPQQLNKVLESILHQRAMKMDSSYAESFIQDYMGTPHLNGLDVLAFDIQRGRDHGIQGYVKYLEQCQGISIKSWTDLERYIHFSDNNKLKSAYNDWNDIDLIIGGISEKPLGDSIVGPTFTCILGKSIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486177;
- 90% Identity
- -
- 80% Identity
- -