Cvir018034.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- Znf711
- Assembly
- GCA_002245475.1
- Location
- NJDC01007277.1:51566-64536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.4 4.8e+02 2.2 0.3 2 23 6 27 5 27 0.94 2 13 0.0029 0.26 12.4 0.8 1 23 981 1004 981 1004 0.93 3 13 5.8e-05 0.0052 17.8 1.8 2 23 1107 1128 1106 1128 0.97 4 13 0.00013 0.011 16.7 2.8 1 23 1134 1156 1134 1156 0.98 5 13 0.007 0.63 11.2 2.5 2 23 1163 1184 1162 1185 0.95 6 13 0.26 23 6.3 1.6 5 23 1198 1216 1196 1216 0.97 7 13 0.0065 0.58 11.3 1.3 3 23 1223 1244 1222 1244 0.97 8 13 1.6 1.4e+02 3.8 0.2 12 23 1259 1270 1255 1270 0.84 9 13 0.00039 0.035 15.2 1.4 1 20 1276 1295 1276 1298 0.91 10 13 0.0054 0.48 11.6 1.3 1 23 1306 1328 1306 1328 0.98 11 13 0.005 0.44 11.7 7.2 1 23 1334 1356 1334 1356 0.98 12 13 7.3e-06 0.00065 20.6 1.5 1 23 1362 1386 1362 1386 0.98 13 13 0.00061 0.054 14.6 4.9 1 23 1392 1414 1392 1415 0.96
Sequence Information
- Coding Sequence
- atggATCAAAGGGTTCAATGCCCTGTATGTACTCTGTATCTCCACAGTGGGATGACATTGGAGTCCCATTTGGATACACATCCAAAGGATCAAGTCATAAAGGCTTTGTGCAATCTATCAGCAAAAGGTACTAGTTATGGGAGTAGGACCTCAACTCCGACACACTCAGAACGTTCATACAGGAGTCGGTCAAGAACGCCAGCGACAGAGGACAGTTTAAGATGGACAAATTCACATAGAACTACTGACAGTGAGAAATATTGGAGGAGAACACCAAGTAGGAACAAATCCACATCATTGGCTAGTTCAAGGAATGGGACTCCAGATATAAGAATGAGTAACATATCATTTGAGAATAACTTGATAAACTCTTCTGACACATATGCAGTACGATTAGATAAACCTCACCAAACATTTGGAAATGGAGACTCACCCTCCATTGCCCACTTTGATCAACAATATCCTTATTACAATGCACAACAAGAGGATCCAGAAATCAAGTTTTCGCGTAGCTCTGAGTATACTGGAATGGAAagtacaaacaatatttttacatataatatgcCAACTGTATCCCCTAGCATCAAGTTGCAGACAACAGTTGTTCCTTCGCTCTCTAAAAGAGCTAATGATGTTGTGAAAATTGTGCCTAAACAAGGAAATGTCCTTTTGAAAACCAATGTAGGTGGTGTACAATATATAACACCTGGAGTGAAACCTTTACATGTTGTAATGCCATCTCCATCATTTGTTCAGAAAAACATACATAGTAATATGATTATGACCGGTAACTTACCAAATGCTCAGATTTTAGATCCAAAAACTGTAGCATCCCCCTTAAACAGTCAATTTAACCAAATATCAACAGGTTCTATAACTCCTGGGACAACAGTTGTTACCCAAAACTCACAGATTATTTATAGAGAGATGGTACATAATATTGATGGAAAACCTTTCATTTCTAGTATGCCAACTGTACTTGGTGGACATGATACCATCTCAAATGTTGCTCAAAGTAGTTCTATGTATCAAAATGTAATGGTTGTTGACCAGTTTGGTAATACTTCATGTATGTATACTACACCACAACAATTGTTAACTAAACCATGTGAAACACCAATATTTAATGAAAGTATTCCACATATGGGAATTGATAAACCTGTGCCTAATATAGTTACGGATCCTAATAAAACACTTGTTATTGAAGTAAATCCAAtagtacctataacatctacctCTGTAAGTGAGACTGGTACAAGCATTTTACCTACACAGACCACTACGACTGTTAGACTAGAAAATATTGCAGCTGAAAAAGTTGGTGTTGAAAAATCTGATCCTAAAAATGATGTATCTGTGTCCAATAagggtttaaaaattttaagcaatATTAAAGTAGAAGTCCCAGTCCAACATCACAAGAATATGTTAAATACTATTATGGATTTGACTGGTCCAAATGATACTGAATATACTCAGAGACCATTAAGTCCAGATAAGATTTTGCCAGATTTAGATGACAATACTACAAATGTTACTGAAAATTCTTTGCAACCTGCGGAAAATAGTGATTTAGTTCCTCATACTTTCTCTGTAATAAAGAATGTTGGGAATCCACCATCTTATAAAGAGACTTCCAAAGCAAGTACTAGTAGTAAATTAGATGTGGAATTTTCCGATAGCTGTCCTGTACCTGATCTTATTTGTAATGAAAAGGCATCAATCTCTCCTTGTAGTGAGCTGTCAGAACATGGAGATAATTCTGTTGATCACCCTCCTCTTTCTCCTAAGACTGAGCAAAATGAAACCATTGCAAACATAGTTGTAGAAACTGAAAAGAAATCACCACTGAAACCTGTTAGAAGTGTCCCACTTagacttaataatatttatgtgaagaagcacaaaaaaatcttacaaataaaaaatgctaaatctTTTAGCACTCGTACTAATACTGAAATTGTTCCATTGCCATCATCTTCAAAAGTACCTGAAACATATACAATGAACAAGAAGCATGAAGAGGTTGAAAATAAAACTCCCATGTTAACTACTATATCAATTGAAAAGGAAAGTAATGATCATAATTTTGATGCTGACACTGAAGAGCAGTCAATGGACATAGAACCAGAGGCTTCATCTGCTTTAAATGGTGATCAATATACATCACACTCTGATTTAGTACCAATAAAAGAAGAGATAAACCTTAGCAATGAATTTAGTAATGAGTCATCTGGTCAACATATGGCACCAATGGAAAGTCTTCGACCAATTAACGTAATTACATATGGTAATATGGCAGTTGATGActttgatgatgatgattcaAATCACAGGGAACTATTAGAACTTGAAGCTGCTTCTAAAAGTAAACAGTTTGTAACCATGATGAATGAAAACTATTTTGGTGATAATATTTATGCTGATTATTTCACACCTGACCGTGTAGAGACTTTTGATACTGAAAAAGATTCTACTTTTGTGAAAGATGGACCAAAAGATCCAATGTACATTTGGGGTGAGCCATCTCAGAAGGAATCCGAATTTGTACTTCCAAACTTTATTCACGAGAGTTATAAAATAGCTGAGAGTGGTGTTGATTACTCAGATATGGGAACAGTGGAAGTGCAAATAGAGGGAGAAGGCGACAAGTGTGAAAGAATTACAAAAGCCGAGTTGTTATGTGAAAGCAGAAGTGAAGGAGAGCcaatgttaaatatttgtactgATGAGAGAATGCCACCTAGAGGAGAGTTAAGTGGACAAGAGAGCAACGGAGATTTAGAGTCACCATGGAGTGGAATTTATTCAGAAGTCCCGCCGGCCGAGACTTATGATCTAATTGCACGTGAAAGTTGGGTTTCGGACGGATCAGAAGTTGATGCAAGTGAAAAAAATGATACTTTGGACGAAGAACTTCACTTCCCCAAAAGATTGTACACATGTGCACATTGCAGTATCAAATTTCCGAGTTTAAAAGAGTTACGAGCCCACAAATCCTTGGCGCATGCTTTACCAACATGCTCTACCACTAAGACCACGTACAGTCGGATGGTGACATCAAGAATAATAAAGAAAGAGGAAAAGCCAGATACCAGCGTACTTGCagGGAGTATTCTCCAAATTGACTCTAAAGAGACTATTTCATCGACAATTCTTCAAGTTTACGACGTGAAGTCGGAGCCTAAACCTCCTATAGCTGGGCTCATCAAACAAGAACCTAAGAGACGGAGGAAGGACTATGTCTGTCCAACGTGTAAGGAAGATCAGTTGACTGACACACAGTTCCATGAACACCTCAAGATCCATCCTCTGGAGTGTCTCACGTGTGGGAAGTGTTTCTTCAAACGTGCTAATTTGGCCTTGCACATCAAAACCCATTTGGGGATAAAGAATTATAAATGTGATGTATGTGAGAAGCGTTTCATCACCCGTCAGAAGCTGAACGATCATCACAACATCCACACAGGGCGGACCCCCGTCAAGTGTACCGTTTGTGATGACACCTTCCGTCGATATTCCAACATGGTGCAGCATAGGGATCGGCACCACTTCAAGAAGAAAGTGAAAGTGCGCGACTTCGTGTGCCACTGCGGCGCTGTTTTCCACTCGAAGGCCAAGCTGGTGTGGCACAAGGAGACGCACGAGGAGAAGCCCAAGGCGTGCCAGTACTGCAGCGACAAGTTCGTGCACGCCGCCTCCCTCACGCGGCACGTGCGCCGCTCGCACAACGAGTACTACCTGTCCGAGCGGCGGGCCGGCAAGGTATACCTCAGATCGAATCTGCGCGCTCATTTACTGACGCACACCGGGAAACGTCCTTACAACTGCGTCATATGCAATAAGTACTTCACCACAAAGTGGAACCTGAAGCTCCACCGCTGGACCCACATGAGCCGCTCGGCCAAGCCGTACAAGTGCAACCTGTGCAAGGGCGCCTTCATCCGGCACACCGAGTACGTGTCCCACATGAACGCGCACAAGTCCGTGCGGCCCTACACCTGCAACTATTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTCAGGGAGCACGAAATGGCCAAGAAGTATGTCTGCAAAGTGGCCGAGTGTGGGAAAACCTTCCACCGTAGTTATTATCTGTCGGAACATATGAAAGTACATAGTGGCGTTAGACCGTATTCGTGTAATATATGTGGGAAGACCTCAAGTAACAAGTCCAACCATAATAAACACGTGAAGATACACCATGCCAGGGAGCCGGTCGCGGCTGAGGCGTAA
- Protein Sequence
- MDQRVQCPVCTLYLHSGMTLESHLDTHPKDQVIKALCNLSAKGTSYGSRTSTPTHSERSYRSRSRTPATEDSLRWTNSHRTTDSEKYWRRTPSRNKSTSLASSRNGTPDIRMSNISFENNLINSSDTYAVRLDKPHQTFGNGDSPSIAHFDQQYPYYNAQQEDPEIKFSRSSEYTGMESTNNIFTYNMPTVSPSIKLQTTVVPSLSKRANDVVKIVPKQGNVLLKTNVGGVQYITPGVKPLHVVMPSPSFVQKNIHSNMIMTGNLPNAQILDPKTVASPLNSQFNQISTGSITPGTTVVTQNSQIIYREMVHNIDGKPFISSMPTVLGGHDTISNVAQSSSMYQNVMVVDQFGNTSCMYTTPQQLLTKPCETPIFNESIPHMGIDKPVPNIVTDPNKTLVIEVNPIVPITSTSVSETGTSILPTQTTTTVRLENIAAEKVGVEKSDPKNDVSVSNKGLKILSNIKVEVPVQHHKNMLNTIMDLTGPNDTEYTQRPLSPDKILPDLDDNTTNVTENSLQPAENSDLVPHTFSVIKNVGNPPSYKETSKASTSSKLDVEFSDSCPVPDLICNEKASISPCSELSEHGDNSVDHPPLSPKTEQNETIANIVVETEKKSPLKPVRSVPLRLNNIYVKKHKKILQIKNAKSFSTRTNTEIVPLPSSSKVPETYTMNKKHEEVENKTPMLTTISIEKESNDHNFDADTEEQSMDIEPEASSALNGDQYTSHSDLVPIKEEINLSNEFSNESSGQHMAPMESLRPINVITYGNMAVDDFDDDDSNHRELLELEAASKSKQFVTMMNENYFGDNIYADYFTPDRVETFDTEKDSTFVKDGPKDPMYIWGEPSQKESEFVLPNFIHESYKIAESGVDYSDMGTVEVQIEGEGDKCERITKAELLCESRSEGEPMLNICTDERMPPRGELSGQESNGDLESPWSGIYSEVPPAETYDLIARESWVSDGSEVDASEKNDTLDEELHFPKRLYTCAHCSIKFPSLKELRAHKSLAHALPTCSTTKTTYSRMVTSRIIKKEEKPDTSVLAGSILQIDSKETISSTILQVYDVKSEPKPPIAGLIKQEPKRRRKDYVCPTCKEDQLTDTQFHEHLKIHPLECLTCGKCFFKRANLALHIKTHLGIKNYKCDVCEKRFITRQKLNDHHNIHTGRTPVKCTVCDDTFRRYSNMVQHRDRHHFKKKVKVRDFVCHCGAVFHSKAKLVWHKETHEEKPKACQYCSDKFVHAASLTRHVRRSHNEYYLSERRAGKVYLRSNLRAHLLTHTGKRPYNCVICNKYFTTKWNLKLHRWTHMSRSAKPYKCNLCKGAFIRHTEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVAECGKTFHRSYYLSEHMKVHSGVRPYSCNICGKTSSNKSNHNKHVKIHHAREPVAAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256260; iTF_00144977;
- 90% Identity
- iTF_00256260;
- 80% Identity
- -