Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01002002.1:49742-69630[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0016 0.15 13.2 0.6 1 20 49 68 49 71 0.94

2 19 1.1e-05 0.001 20.0 5.6 1 23 90 112 90 112 0.98

3 19 2e-05 0.0018 19.2 4.6 1 23 118 140 118 140 0.99

4 19 1.9e-05 0.0017 19.3 5.3 1 23 146 168 146 168 0.97

5 19 6.2e-06 0.00055 20.8 7.3 1 23 174 196 174 196 0.97

6 19 3.9e-07 3.5e-05 24.6 2.9 1 23 202 224 202 224 0.97

7 19 5.6e-05 0.005 17.8 6.7 1 23 230 252 230 252 0.97

8 19 0.00013 0.011 16.7 5.6 1 23 258 280 258 280 0.97

9 19 2.7e-07 2.4e-05 25.1 1.9 1 23 286 308 286 308 0.98

10 19 5.3e-06 0.00047 21.1 7.7 1 23 314 336 314 336 0.98

11 19 4.3e-06 0.00039 21.3 6.6 1 23 342 364 342 364 0.98

12 19 5.6e-06 0.00049 21.0 4.5 1 23 370 392 370 392 0.99

13 19 2.5e-06 0.00022 22.1 5.3 1 23 399 421 399 421 0.98

14 19 1.4e-05 0.0013 19.7 6.2 1 23 427 449 427 449 0.97

15 19 1.7e-06 0.00015 22.6 6.0 1 23 455 477 455 477 0.98

16 19 7.8e-05 0.0069 17.4 10.1 1 23 483 505 483 505 0.97

17 19 4e-06 0.00035 21.5 6.0 1 23 511 533 511 533 0.97

18 19 0.0004 0.036 15.2 0.3 1 23 540 562 540 562 0.96

19 19 0.0054 0.48 11.6 6.4 1 23 571 593 571 593 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0016	0.15	13.2	0.6	1	20	49	68	49	71	0.94
2	19	1.1e-05	0.001	20.0	5.6	1	23	90	112	90	112	0.98
3	19	2e-05	0.0018	19.2	4.6	1	23	118	140	118	140	0.99
4	19	1.9e-05	0.0017	19.3	5.3	1	23	146	168	146	168	0.97
5	19	6.2e-06	0.00055	20.8	7.3	1	23	174	196	174	196	0.97
6	19	3.9e-07	3.5e-05	24.6	2.9	1	23	202	224	202	224	0.97
7	19	5.6e-05	0.005	17.8	6.7	1	23	230	252	230	252	0.97
8	19	0.00013	0.011	16.7	5.6	1	23	258	280	258	280	0.97
9	19	2.7e-07	2.4e-05	25.1	1.9	1	23	286	308	286	308	0.98
10	19	5.3e-06	0.00047	21.1	7.7	1	23	314	336	314	336	0.98
11	19	4.3e-06	0.00039	21.3	6.6	1	23	342	364	342	364	0.98
12	19	5.6e-06	0.00049	21.0	4.5	1	23	370	392	370	392	0.99
13	19	2.5e-06	0.00022	22.1	5.3	1	23	399	421	399	421	0.98
14	19	1.4e-05	0.0013	19.7	6.2	1	23	427	449	427	449	0.97
15	19	1.7e-06	0.00015	22.6	6.0	1	23	455	477	455	477	0.98
16	19	7.8e-05	0.0069	17.4	10.1	1	23	483	505	483	505	0.97
17	19	4e-06	0.00035	21.5	6.0	1	23	511	533	511	533	0.97
18	19	0.0004	0.036	15.2	0.3	1	23	540	562	540	562	0.96
19	19	0.0054	0.48	11.6	6.4	1	23	571	593	571	593	0.99

Sequence Information

Coding Sequence: ATGCAGCGCCCGCGCCGTCCACCTACCCTCTCTTGCGTCTACGAGGCGTATGATTCCAAGAGTATCAAAATGTCTCCTAACTTTTTATTGTGTCCATGGAGTTCATATGATACCTTCAAGCGTTATCACGGCGAAAGTAAACCATATACATGTCAAGTTTGCGGATCTGCGTTTGCCAATCCTGTCGAACTTTCGAGACATGGAAAGTGCCATTTAGCGGGCGACCCAGCAGAGCGGCAGGCGAAGAGAATGGCCCAGGACAAACCCTACGCGTGCACCACTTGCCACAAAACGTTCTCCAGGAAGGAACACCTCGACAACCACGTCAGAAGTCACACGGGGGAAACTCCTTACAGATGTCAATATTGTGCGAAAACATTCACGCGCAAAGAACACATGGTGAATCACGTGAGAAAACACACGGGAGAAACTCCACACAGGTGTGAAATATGTAAGAAGAGCTTCACGCGGAAAGAACACTTCATGAACCATGTTATGTGGCATACAGGTGAAACGCCCCATCATTGTCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCACTTAGTGAACCATATGAGATCTCACACAAATGACACGCCGTTCAGGTGTGAACTGTGCGGCAAGTCCTTCACGAGGAAGGAACATTTCACCAATCACATACTGTGGCATACGgGTGAAACACCACATCGGTGTGACTTCTGCTCGAAAACATTCACACGTAAGGAGCATCTCCTGAACCACGTGCGACAACACACGGGCGAGTCTCCGCACCGGTGCAACTTCTGCGCCAAGTCGTTCACTCGGCGCGAGCATCTCGTCAACCACGTGCGCCAACACACTGGCGAGACGCCCTTCCAATGTGGATACTGTCCCAAAGCGTTCACTAGGAAGGATCatttagTAAACCACGTGCGACAGCACACGGGCGAGTCTCCGCACAAGTGCTCGTACTGCACGAAGTCTTTCACCCGCAAGGAGCACTTGACAAACCACGTGCGGCAGCACACGGGGGAGTCGCCCCACCGCTGCACCTACTGCGCTAAATCCTTCACCAGGAAGGAGCATCTCACCAACCACATACGACAACATACGGGGGAGACTCCATACAAATGCACGAGCTGTCAGCGTGCTTTTACGCGGAAGGAACATCTCAAGAGCCATCTCCTTACCCACTCCGGTGCCTCTACAACCCATCAGTGCAACTATTGCAACAAGAGCTTCGTAAGAAAAGAACATCTCGTCAATCATGTCCGACAACACACAGGCGAGACTCCTTTCAAGTGCACGTTTTGTCCCAagtctttttcaagaaaggaaCATCTAACGAATCACGTCCATCTGCACACAGGCGAGACTCCACACAAGTGCCCATTTTGTACGAAAACATTCTCAAGAAAGGAGCATCTAACAAACCACGTCAGAATCCACACAGGCGAGTCGCCGCACAGGTGCGACTTTTGCCACAAAACCTTCACACGAAAAGAACATTTGACAAATCATTTGAAACAACACACGGGCGACACGCCGCACTCGTGCAAAACTTGCTCCAAGCCATTCACTAGGAAGGAACACCTCATCACACACATgagatCCCATAGTTGCGGCGAACGTCCTTTCAGTTGTGGCGAGTGTGGGAAATCGTTCCCTCTCAAAGGTAACCTGTTGTTCCACGAGAGGTCCCATAACAAGGCTGCCAACACTAGACCTTACCGCTGTGATATATGTTTTAAGACTTTTATGTGTAAAGGGCACCTCGCCACCCACCGCCGGACGCACGCCGACGCGGCCGGGCCGGGGGCGGAGGGCGCGCCGGCCGAGGGGGCGGGGGCGGACGAGCCCTGCGCCGACATCGACAAGTGCGCCAAGGACGACGTCGACAGGAAACCCGTGCTCAGGGAACCATCTGAGAGCAGAACTACAGACAGCAACATCACGCAAAACACCCAAACCAACGCCACTGTAATGCAGATACAAAATTCGCAGGTTCGGTCAGCGGCGGCAGGGCCGAATGTCCCCGAGGCCTTCGCGGCGTCGGCAGCGGGCGCGCATCACACCGTCTCCGTCACGTACTAG
Protein Sequence: MQRPRRPPTLSCVYEAYDSKSIKMSPNFLLCPWSSYDTFKRYHGESKPYTCQVCGSAFANPVELSRHGKCHLAGDPAERQAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPYKCTSCQRAFTRKEHLKSHLLTHSGASTTHQCNYCNKSFVRKEHLVNHVRQHTGETPFKCTFCPKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCHKTFTRKEHLTNHLKQHTGDTPHSCKTCSKPFTRKEHLITHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKAANTRPYRCDICFKTFMCKGHLATHRRTHADAAGPGAEGAPAEGAGADEPCADIDKCAKDDVDRKPVLREPSESRTTDSNITQNTQTNATVMQIQNSQVRSAAAGPNVPEAFAASAAGAHHTVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00256177;
90% Identity: iTF_00257138;
80% Identity: iTF_00257138;