Cvir003585.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- clz9
- Assembly
- GCA_002245475.1
- Location
- NJDC01008100.1:1926-3122[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 2.6e-05 24.5 0.0 2 39 23 59 22 63 0.89
Sequence Information
- Coding Sequence
- ATGCCTCCATCGAAaccaaatactaaaaaaatcagtGTCGTGAAAAGAAAATTGTTCCAGTACTCACCGCATAAAATAACATTAGCGTTGAACGCAATAAAGAATGGGATGCCCGTTGCCACTGCTAGTAGAGATTTTAACGTACCTAGAACGACTTTGCGTTACAAAATTTCTGGAAAAGCGCCTGAAACTTCTGGAAATGTAGGGCCCCAGTCAGTACTTGGAAGACAAATAGAAAACGAACTTGTCATATGGATCAAAGATTGCGCTCGCGCTGGATTTCCTAACAACAAGGAAGGTTTACTGGATTCTGTTAAGAAAATTGTTGTGAAGGGCCAAATTGCTACaccttttataaattatagaccTTCAAGATCCTGGTTCGATGGATTTATGGCGAGACATCCTGATTTGAGCCAAAAACATGCCGAGTATATTAATAAAGCTCGTGCCTTAATAACTGAAGAGAAAATTCGGAACTGGTTCCAAGAAATTTCTTCATTGCTCggtgatataaatttaaagattcTAGAAAACCCTACGAGAGTGTGGAACTGTGATGAAACAGCTTTTTTTCTAGCCCCAAAAGGCTCTCTTGTGTTAGCTGAAAAGGGACAGCATGTTTACGATACATCAAAAAACAGCGATCAAGAAAACATAACTACCCTATTTACTGTCAATGCCGCTAGTGAATTTGCACCTCCTTTaactatttacaaatacaaaagaatGAGTTCTGAAGTTCTTGACAATGCACCAAATGGATGGGGAGTTTGTCAAACCGATAAAGGCTGGATGACGGGCGAATCTTTCTATGAATATGTAGCAAACGTCTTCATTCCTTacttgaaagaaaaacaaattgaattaccaataattttgtttcttgACGGCCACAAGTCCCATCTGACTATGCATCTTAGCGAATTGTGTAGGGAAAATGGCATTATAGTTATTGCTCTTGTCCCAAATACAACTCATATGTTGCAACCTTTGGACGTTGCTGTGTTTTACCCATTGAAACAGAATTGGCGTCAGATGGTCAAAAAGTGGCGCATTGAAAACGATGGACAAGAAATCACAAAATTAACTTTGCCATCTGCTCTGCAAAGTTTACTCCTTGACAAAGTTTGCAAAAAATGTGCAAGCAGGATTTCAGACATGTGGTTTGTTTCCATTTGGTGCTGCCTTCGTTAA
- Protein Sequence
- MPPSKPNTKKISVVKRKLFQYSPHKITLALNAIKNGMPVATASRDFNVPRTTLRYKISGKAPETSGNVGPQSVLGRQIENELVIWIKDCARAGFPNNKEGLLDSVKKIVVKGQIATPFINYRPSRSWFDGFMARHPDLSQKHAEYINKARALITEEKIRNWFQEISSLLGDINLKILENPTRVWNCDETAFFLAPKGSLVLAEKGQHVYDTSKNSDQENITTLFTVNAASEFAPPLTIYKYKRMSSEVLDNAPNGWGVCQTDKGWMTGESFYEYVANVFIPYLKEKQIELPIILFLDGHKSHLTMHLSELCRENGIIVIALVPNTTHMLQPLDVAVFYPLKQNWRQMVKKWRIENDGQEITKLTLPSALQSLLLDKVCKKCASRISDMWFVSIWCCLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044443;
- 90% Identity
- iTF_01192641;
- 80% Identity
- -