Arep007236.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- clz9
- Assembly
- GCA_949125135.1
- Location
- OX421227.1:11024978-11026333[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 5.5e-05 23.4 0.0 2 35 23 55 22 63 0.89
Sequence Information
- Coding Sequence
- ATGCCTCCATTGAAaccaaatactaaaaaaatcgGTGTCGTGAAAAGAAAATTGTTCCAGTACTCACCGCATAAAATAACATTAGCGTTGAACGCAATAAAGAATGGGATGCCCGTTGCCACTGCTAGTAGAGATTTTAACGTACCTCGAACGACTTTGCGTCACAAAATTTCTGGAAAAGCGCCTGAAACTTCTGGACATGCAGGGCCCCAATCAGTTCTTGGAAGACAAATAGAAAACGAACTTGTCATATGGATCAAAGATTGTGCTCGCGCTGGATTTCCTATCAACAAGGAAGGTTTAGTGGATACTGTTAAGAAAATTGTTGTGAAGGGCCAAATTGCTACACCTTTTATAAATGATAGACCTTCAAGATCCTGGTTCGATGGATTTATGGCGAGACATCCTGATTTGAGCCAAAAACATGCCGAGTATATTAATAAAGCTCGTGCCTTAATAACTGAAGAGAAAATTCGGAACTGGTTCCAAGAAATTTCTTCATTGCTCGGTGATGAAAATTTAAAGATTCTAGAAAACCCTGCGAGAGTGTGGAACTGTGatgaaacagctttttttctAGCTCCAAAAGGATCTCTTGTGTTAGCTGAAAAGGGACAACATGTTTACGATACATCAAAAAACAGcgataaagaaaatataactaCCCTATTTACTGTCAATGCCGCTGGTGAATATGCATCTCCTTTAActatttacaaatacaaaagaATGAGTTCTGAAGTTCTTGACAATGCACCAAATGGATGGGGAGTTGGTAAAACCGATAAAGGATGGATGACGGGCGAATCTTTCTATGAATATGTGGCAAACGTCTTCATTCCTTACctgaaagaaaaagaaattgaattaccaataattttgtttcttgaCGGCCACAAATCCCATCTGACTATGCATCTTAGCGAATTGTGTAGGGAAAATGGCATTATAGTTATTGCTCTTGTCCCAAATACAACTCATATGTTGCAACCTTTGGACGTTGCTGTATTTTACCCATTGAAACAGAATTGGCGTCAGATGGTCAAAAAGTGGCGCATTGAAAACGATGGACAAGAAATCACAAAATTTACTTTGCCATCTGCTCTACAAAGTTTACTCCTTGAAAACAAAGATAAGTTTGCAAAAAATGTGCAAGCAGGATTTCAGACATGTGGTTTATTTCCATTTGGTGCTGACTTTGTTAATTACAAGAGAATTATAAAAGATAGAGATCCAAAAACTATTGAAAACCGACACGAAGTTGCTATTTCTGAATCCAGCTACATTTCATACCTGGAAAGTTCACTACCTTTTGTTCGAATGAGTCAACTGAGCCTCATTCACCTAACTCACTAA
- Protein Sequence
- MPPLKPNTKKIGVVKRKLFQYSPHKITLALNAIKNGMPVATASRDFNVPRTTLRHKISGKAPETSGHAGPQSVLGRQIENELVIWIKDCARAGFPINKEGLVDTVKKIVVKGQIATPFINDRPSRSWFDGFMARHPDLSQKHAEYINKARALITEEKIRNWFQEISSLLGDENLKILENPARVWNCDETAFFLAPKGSLVLAEKGQHVYDTSKNSDKENITTLFTVNAAGEYASPLTIYKYKRMSSEVLDNAPNGWGVGKTDKGWMTGESFYEYVANVFIPYLKEKEIELPIILFLDGHKSHLTMHLSELCRENGIIVIALVPNTTHMLQPLDVAVFYPLKQNWRQMVKKWRIENDGQEITKFTLPSALQSLLLENKDKFAKNVQAGFQTCGLFPFGADFVNYKRIIKDRDPKTIENRHEVAISESSYISYLESSLPFVRMSQLSLIHLTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192641; iTF_00256840; iTF_00164303; iTF_00640248; iTF_00640244;
- 90% Identity
- iTF_01192641;
- 80% Identity
- -