Basic Information

Insect: Calameuta pallipes
Gene Symbol: MBD-R2
Assembly: GCA_030142375.1
Location: JARQSW010000842.1:52766-60279[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.8e-17 2e-13 49.9 0.3 8 69 538 599 532 607 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.8e-17	2e-13	49.9	0.3	8	69	538	599	532	607	0.91

Sequence Information

Coding Sequence: ATGAAGCAACGATTCGCACGGTCGCGTGGGCCTTGCTACGAGATGCCGCCAACGGGCCCAAGAGGAATGGCGCGCAAATGTTGCGTGCCAAATTGCCAGATCGACGTGCGAGTTGTCCGCGGTAGGGGTATACCATTTCACAAGTTCCCAAAGGACACTATCCTTAGGAGCAAGTGGATTGCTTCTGGTGGTTTCGAACAAAACTTTAAACCCACGCCCGGACAATTTGTCTGCCATAGGCATTTCAAAAAGGCCGACTACGAGACCGCCAAAGGACAGAAGTTCGTATTGAGGAAAGGAGCGGTCCCGTCGGTTTTTGACGATTACGATAATCATCCAGATCCTATGACAATGCCTGTAAAGTCTACTTCTTATGCTCAGGAAGATTTGGATCTTATTAATTCTGAGATATCTAATTTGGATCATATTGACTCTGCAACTTTCATGGATGCACATACACCCAAGTCTGATAGCTGCAGTGAGGCTTACAATTCCAGACCAGCTTCTGCCGCTGATACATTTAATCCATTTGAAATATCAGAGGTGAATGATGGAGAACAGAAAGTAGAGAGGGCACAGCTTCCTCTTAAGGACGTTAAGGACAATGTTGATACAATTGAGAGTAAATTTAATCCTGCTACGAGGCAGCTGGGAGTCACCGAACTTGAAGATAAGGCAGAAAGTGCAGGGATCGatttgaaaatcatcaaaGAAGAGCCAGAGCAGGTTGCTACAactgaagataaaaaaagtgatgagAATGGAGATTCTAAAGTGAAAGTGATGAGTCGTGGTGGCTTGAAATTCTTTCCTGGTGCAAAGTTAGAGGCTAAAGATTTCAATGAGAAATGGTATTCTGCAAGAGTAGTGGAAACGGACTGGGTTGAGAGGGAAGTGTTGATACATTTCGACAAGTGGAGTTCTAGATTTGATGAGTGGATACCTATGGACAGTTCCAGATTACGAGTACTTCAAATACAACCAAGcGAGCCTACTTGGACGCTGCCATCTCCGGAAACGAAGATGCGTGAATTCGTCGTCGGCGAGAAGATCCTGGCTACGTGGGCAGATGGCAGAAAGTATCCGGCCAGAGTGAACGCTGTGTTGGGGAACGATAGATACGACGTTCTGTTCGACGATGGATACGCGAAGATCGTCAGGTCCTCGAAGATGACTAAAATCGCTACCACGTCCGAGAAGAAGTTGGTTGAGGGGGATTATATAGGGAGTAagcaagagagaagagacAAGAAGCGGAAGCATACTGTGATGGAGCTGTTTCATACGCATAGCAAGAAACGTCAGAAAGTTGAGGTAGAGCGTCCGATAAAGAAGGAAGAGACTGTGCTCAGTGAGGACGATGGAAAGCTTGATCTGGGCGATTCGGTTCTCGGTACTTCTTATGACTCGGGATCAGAAGTTTTACGTGGCTTTGAGAATACCAAACCTAAGATGAAGACGTTCActaagaagaagaggaaggaattCACGAGGATTGAAACTGACAACGAAGAAGATGTTGGTCCTGAATGGATCGATGGTGAACCACAAGGCATTGAATCTTACATCGTAGATGGCAATGATGGTCCTCGTCGTTCCATCATCGTACCCGATAAGAGGTTACCACCAGGATGGCAGAAGCACTTTACACAAAGGCGTACAGGCTCCTCAGCTGGCAAATGGGATGTTCTCTTCATACATAAAACAAGTGGAAAGAAGTTCCGGTCGCGAAACGATATCAGAGCCTTCATGGAGCAGCAAGGTCAATTCGAATTTGATCCAGAGAAATTTGACTTTTGCATTCACCGTAAGAAAACCAACAAGGTTAATATGATGAGACTTAAGCAAGAGACGCCTCCGGAAGTTCctaggaaaataaaaactctTCTGCCTAAAACAAAGACTTCTACGCCAGAAAATACATCTTTTCTATCATTGACTCCAGTGACCCTTCCGTCAGCTACACCAATGACCCCGGTCGACAGCGGTGCCGTCTTCATAGGTGGCCTTCGCGTGGAAATGGAAGATAGCGCATACAAGTGTCCTAAGGAAGGATGCAACAAGAACTTTCGCAAAGAGAATCTCCTGCAGATGCACATAAAGCATTATCACCCGGAGTATTCCAAGTTCCTGGGTTCAACACCAAATGTCGCTGACCTGGCCTACGCCAGGACTATAGGAGAGTCCATCGAGGACATCATACCCAAGAAACCAAACAATTTCCTGGAGAAGATCAACAAATTCGAAAAGAAGAAGGCAGGTCATGAAAAACCTTTGACTCCGGCGGTCGTAGAGTGTGAAACTCCTCGACCAGACAAACCTATCACCATTGTCAAGGAGGAGACCAAATTAGAAATCTCGTCGCCTACCTCCACCCAGAGTATCGATATGGATGAGGACAGCAAGAAACGTGAAAGTAATTGTGCCATGTCGCCAGGTACTCTATTCGACATGAAAGTCAGGGAAGAGAAGACTCAAGTGGGAATTAAAACTCTACTTCCTGTGAGACCAGCATCCACTGCGGAGCCTTTGAAACTTGACAGATCCAAATCTTTGGACGAGTCGACTCATCCTGACAAAGGGAAGGTACAAAAGAAACGACAGCTATCCGAGTACAGTACGGACTTTCCTGGGAAATCTAAGAAGAAGCAAGGCATGCAGGAGCTTATGGATGATTATGGGGATTTAGATGACAGTGCTTTGGATGTTGAAGAACCTGCTGCTCCAATGTACAGATTCAGTCGCAGAAAATCAGATCCAAAAAGCGACGAGAACAGCCAGAGCAGTCAGCTAAACGATACTCGCCATGAGAAAGGCGATACCCCTAAGGGGGACGCTGCCAAAagagataatattaatgatgcCGAAgaAGGCGAGGGTGTCATGATGATGATCAACGGGGAGATGGTGAAAGTTGAACAGTTACGTCGGGAGGAGATAATCAATTGCACCTGCGGATACATGGAGGAAGACGGTCTTATGATACAGTGCGATCTGTGTCTATGCTGGCAACACGGGCACTGCAATGGCATCGAGAGGGAAAAGGACGTGCCTGAGAAATACGTCTGTTACATATGCAGGCATCCTTACAGACAGCGGccatctttaaaatatttgcatgatCAGGATTGGATCAAGGAAGGAATACTACCAAGTTTACCGAATCGTTCGAAAAATCAAGCCGCCATTAACCAGAGGACCGCCATGTTGAAACGCTCGTACGATTTGGTAGGAGCTCTTTTGCAGATACAGCAAGTTCTCCATAGTCTGCGTGTCAAGATCAACGTGGCGCAGAAAAAGGATCATCCTAAATTGTATCTGTGGGCTAAGAACTGGGAGAAGAGCGAGATACCAAAACCGGATACGGATCCAGTGCCTGTAATGGAGATCATAAAGGCACCGTTGGATTCAATGGATACAGCTTCGGAAACGTCACACTCTCTGGACCCCAAGGTAGAGTTTAAGGAGACGGTCAAGGAGGATCCGGATAAGAAGTCTATAGCTTCGGATACGGAGCTCATGAAGATCCTTGAAGAAGACAGTACACACTCTGACGAATCTAAGGTCATCAAGAAGGAAGATACTCAGACGGATGGACATATTCTATTGGATGCACTCACCAGGACAAGCAGTCCCGAGAAGAAGACGTCCGAGAATCTCAGTGAAAATCCGGATACTCCAAGTGTGGATCTCCCGTCGACGTCTCAGAGTCCACTGGCTGTTTCCACGCCGGGAACTGAAAATCTTACACAGGAAACCAGTCCCCTCCCTCAACCTGAGACTGTTCCGCCTATGCAACCTTTTATTCCTGAACCGGAAGCTCCTATAGATCCAGCGGAATGTCGATTAAGATTATTGGAGCACATTGAACACTTTCAGAATCATATCGACTCCAGATTAACCACCATCGAGGCTCAAGTGTGCGCACTGGAAGCCATGGATCCGGATGACCCGACACCCAGTGCGGATGTTCTACCCAGGACCAAGCAAACTGTACAAATGTTACTCAGGGACTTAAATACTGTACGAAAATTAGCTGCACTCTGCTGA
Protein Sequence: MKQRFARSRGPCYEMPPTGPRGMARKCCVPNCQIDVRVVRGRGIPFHKFPKDTILRSKWIASGGFEQNFKPTPGQFVCHRHFKKADYETAKGQKFVLRKGAVPSVFDDYDNHPDPMTMPVKSTSYAQEDLDLINSEISNLDHIDSATFMDAHTPKSDSCSEAYNSRPASAADTFNPFEISEVNDGEQKVERAQLPLKDVKDNVDTIESKFNPATRQLGVTELEDKAESAGIDLKIIKEEPEQVATTEDKKSDENGDSKVKVMSRGGLKFFPGAKLEAKDFNEKWYSARVVETDWVEREVLIHFDKWSSRFDEWIPMDSSRLRVLQIQPSEPTWTLPSPETKMREFVVGEKILATWADGRKYPARVNAVLGNDRYDVLFDDGYAKIVRSSKMTKIATTSEKKLVEGDYIGSKQERRDKKRKHTVMELFHTHSKKRQKVEVERPIKKEETVLSEDDGKLDLGDSVLGTSYDSGSEVLRGFENTKPKMKTFTKKKRKEFTRIETDNEEDVGPEWIDGEPQGIESYIVDGNDGPRRSIIVPDKRLPPGWQKHFTQRRTGSSAGKWDVLFIHKTSGKKFRSRNDIRAFMEQQGQFEFDPEKFDFCIHRKKTNKVNMMRLKQETPPEVPRKIKTLLPKTKTSTPENTSFLSLTPVTLPSATPMTPVDSGAVFIGGLRVEMEDSAYKCPKEGCNKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIEDIIPKKPNNFLEKINKFEKKKAGHEKPLTPAVVECETPRPDKPITIVKEETKLEISSPTSTQSIDMDEDSKKRESNCAMSPGTLFDMKVREEKTQVGIKTLLPVRPASTAEPLKLDRSKSLDESTHPDKGKVQKKRQLSEYSTDFPGKSKKKQGMQELMDDYGDLDDSALDVEEPAAPMYRFSRRKSDPKSDENSQSSQLNDTRHEKGDTPKGDAAKRDNINDAEEGEGVMMMINGEMVKVEQLRREEIINCTCGYMEEDGLMIQCDLCLCWQHGHCNGIEREKDVPEKYVCYICRHPYRQRPSLKYLHDQDWIKEGILPSLPNRSKNQAAINQRTAMLKRSYDLVGALLQIQQVLHSLRVKINVAQKKDHPKLYLWAKNWEKSEIPKPDTDPVPVMEIIKAPLDSMDTASETSHSLDPKVEFKETVKEDPDKKSIASDTELMKILEEDSTHSDESKVIKKEDTQTDGHILLDALTRTSSPEKKTSENLSENPDTPSVDLPSTSQSPLAVSTPGTENLTQETSPLPQPETVPPMQPFIPEPEAPIDPAECRLRLLEHIEHFQNHIDSRLTTIEAQVCALEAMDPDDPTPSADVLPRTKQTVQMLLRDLNTVRKLAALC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00291537;
90% Identity: iTF_00294526;
80% Identity: iTF_00254376;