Bhed015970.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000021.1:1091467-1094166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0033 0.35 12.2 5.6 1 23 143 166 143 166 0.97 2 17 6.7e-06 0.00071 20.7 0.9 1 23 175 198 175 198 0.97 3 17 0.026 2.8 9.3 0.8 2 23 211 233 211 233 0.97 4 17 0.0014 0.15 13.4 3.2 1 23 242 265 242 265 0.95 5 17 6.9e-05 0.0073 17.5 1.2 1 23 277 300 277 300 0.96 6 17 5.2e-05 0.0055 17.9 0.6 2 23 330 352 329 352 0.96 7 17 0.00034 0.037 15.3 1.3 2 23 362 384 361 384 0.96 8 17 0.055 5.8 8.4 0.7 3 19 390 406 389 409 0.93 9 17 0.0015 0.16 13.3 0.6 2 21 414 433 413 436 0.94 10 17 0.37 39 5.7 2.5 3 23 446 467 445 467 0.93 11 17 0.0036 0.39 12.1 5.7 1 23 472 495 472 495 0.93 12 17 7.5e-05 0.008 17.4 0.7 2 23 506 528 505 528 0.96 13 17 0.01 1.1 10.6 0.8 1 23 553 576 553 576 0.94 14 17 2.3 2.4e+02 3.2 0.2 2 23 583 604 582 604 0.84 15 17 0.028 3 9.3 1.0 2 23 611 632 610 632 0.96 16 17 0.013 1.4 10.3 0.1 1 23 698 720 698 720 0.97 17 17 0.57 60 5.2 2.8 1 23 726 749 726 749 0.96
Sequence Information
- Coding Sequence
- atggcgAACACAGTCGGTGTTGAAGATTTGTCTATGAAAAGGAAGGATCCGACCTCTTTCTTGCCAGAAGAAGCAATGTCGTATGAAATTAAggcgaaaaagaaaaaaaagaagaaacacAAACAGGAGGATCCTTTTAAGGATATTGAAGATAAAATTGTACAATCGACAGAAATAGCTCTCGATCCAGAAGTTACTATTAAAGTAGAGAATATAGAGGTAGAATTGGATTTTAATGATttcACAAACGACCATGGGCTTATGGTGGAAGGTCCTCAAAGCGAGGACAGTCAAGAACCTGCCATAAAACTGGAGCCACAGAATCACGAAgctgttattttaactttcgAGAGTGTAGTCAGTGATAATAAAGTGTATGGTTATAAACACCATGGCCAGAACCATTTAAGCCCTGTGGAGATGGTGCACGTGTGTAAAATTTGCCATCTAGTCTTTCAATCcctaaaaactttaaaaatgcaTCAGAAAAGAAAGCATAAGGTTTTTAGGCGGTCGTTCAAACACGTGTGCAATGATTGCGGAATGTCCTATGAGCAGAAGACTAGCTTAATTGCCCATATAAAGCGGAAACACGGTCCAAATTCCGTGCCGGATGACCGAGAGGAAAGAACTTGTGATGTTTGCGCTCTAGTATTTAAGGGGATGACGAGGTTAAGGATGCATATGCGGAGAAAACACGGGTCCTTCGAAGATTCATTTAGGCATGCTTGCCAACACTGCGGGCTGTCGTACGATAAGTACAGAAGTTTAATAGTCCATATGCAGAGAAAGCATATGCCCGTAAAGAAACCGGTGATTGAACAGTGGTTTAATTGTCCATTCTGCCCGAAAGCCTTCACGAAACGAGAGACTTACGCACGGCACGTGCAGAGGAAACATAGAATAAGTGACGAAGATAATGATAAACGAGTAAATTTTGACCAAAACCTTCTAGAAAGTTGCATGAATGAAGAAACCGGTGAAATATCTTGTAGGGAATGTCCGCTAGTGTTTTCGTCTTTGAATTACCTGAAATTGCACATGAGAAGGAAACATAACGCGCTGAAGGAAGACTTCAGGCTCAAATGTAGAATTTGTAACTTGTCGTATGACAAGATCGAAAGTTTAAAGCGGCATATCAGGAGGAAACACGACAAGGGATCGTTTTGTGAAGTTTGCAATAAACAATTCGATACTAGAGAGTTGTATTTGAATCATTCTCACGTAAAAATGATTAAGGAGTGCCCGGTTTGCGGACTGATATTCTCGTCTAAAGTCGGATTAGGCAAACATTTGCGATGTACCCATAAGGTAGACGCACCAAAAACTGTGTTCTGTAAGTTGTGCAACGAGGGCTTCCACGATAAGAGACAACTGAAGCCGCACTTCATGAAAGTGCATTTAAAGGTTTCGTACACGTGCTGTTACTGCAAGAAAGTGTTTAAAGCGAAGGAGAGTTATCGACgccatgttttatttaaacacccTGCTAAAGATGTTACTGATGAGCTACAAAAGTGCGAGTACTGCACAGAGAAGTTCCCAAACGAAGTAGAACTCTGTCGGCACATCAACGTGGCGCACGGGAATCCACAGGATATACCAAATACCGAAGTAGTCGTAGTTAAGAAAGAGGAATTAGACTTCAAAGAATCATTTCAATGCTCCAAATGTTCCGATTCGTACCCATCATGGCAAGAGCTAAGGTCACATTACGAACAAAACCATCAAATTATTGAGGACACCCAGTGTCAGAAATGTGGTGAAATCGTCCCGGGGAATGAACTTGAGAAACATTTCAAAACCGCTCACATGGAGGAAGCGATGTTGGAATGCAAGTACTGCGAATTTACGACGACGGTACGTGCCAGCATGACGCAGCACACGCTGCGGCATAAAAACGCAACTACCCTACACTGCGACTTTGAGGGGTGCAAATATAAGACCTTCTACGAGGGCGCGATGGTGAAACACAAGAAGAAGCACACGGATCTGGGTGTGAAGCTGCATTGCAAACAGTGCACCTTCCAAACGATGAATAAGTACGTACTGAAGTACCACGAAGAGGCGCACATGACCGGCAAGAAGAAGTACGCGTGCGATCAGTGTGACTATGCGACGATACTGCCCGCGAACCTGGTGCAGCACAGGTACAAGCACTCCACGGAGAAGAGGTTCAAGTGCGAGGTGTGCTCGTTCGCGACCAAGTACAATACATCGCTGCGGTTCCACGTCAAAAAGAAACATTGTGATCTCCCATCATTCAGTTga
- Protein Sequence
- MANTVGVEDLSMKRKDPTSFLPEEAMSYEIKAKKKKKKKHKQEDPFKDIEDKIVQSTEIALDPEVTIKVENIEVELDFNDFTNDHGLMVEGPQSEDSQEPAIKLEPQNHEAVILTFESVVSDNKVYGYKHHGQNHLSPVEMVHVCKICHLVFQSLKTLKMHQKRKHKVFRRSFKHVCNDCGMSYEQKTSLIAHIKRKHGPNSVPDDREERTCDVCALVFKGMTRLRMHMRRKHGSFEDSFRHACQHCGLSYDKYRSLIVHMQRKHMPVKKPVIEQWFNCPFCPKAFTKRETYARHVQRKHRISDEDNDKRVNFDQNLLESCMNEETGEISCRECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSFCEVCNKQFDTRELYLNHSHVKMIKECPVCGLIFSSKVGLGKHLRCTHKVDAPKTVFCKLCNEGFHDKRQLKPHFMKVHLKVSYTCCYCKKVFKAKESYRRHVLFKHPAKDVTDELQKCEYCTEKFPNEVELCRHINVAHGNPQDIPNTEVVVVKKEELDFKESFQCSKCSDSYPSWQELRSHYEQNHQIIEDTQCQKCGEIVPGNELEKHFKTAHMEEAMLECKYCEFTTTVRASMTQHTLRHKNATTLHCDFEGCKYKTFYEGAMVKHKKKHTDLGVKLHCKQCTFQTMNKYVLKYHEEAHMTGKKKYACDQCDYATILPANLVQHRYKHSTEKRFKCEVCSFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496769; iTF_01495978; iTF_00180683; iTF_01494521; iTF_01115903; iTF_01495232; iTF_00197552; iTF_01130234; iTF_01176352;
- 90% Identity
- iTF_01496769; iTF_01495978; iTF_01494521; iTF_01115903; iTF_01495232; iTF_00180683; iTF_01130234;
- 80% Identity
- -