Bphi021735.1
Basic Information
- Insect
- Battus philenor
- Gene Symbol
- -
- Assembly
- GCA_028537555.1
- Location
- JAQMYT010000025.1:2046300-2049112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0031 0.3 12.2 5.6 1 23 141 164 141 164 0.97 2 19 6.4e-06 0.00061 20.7 0.9 1 23 173 196 173 196 0.97 3 19 0.014 1.3 10.1 0.8 2 23 209 231 209 231 0.97 4 19 0.00029 0.028 15.5 1.4 1 23 240 263 240 263 0.97 5 19 6.6e-05 0.0063 17.5 1.2 1 23 275 298 275 298 0.96 6 19 8.8e-05 0.0084 17.1 0.8 2 23 328 350 327 350 0.96 7 19 0.00033 0.031 15.3 1.3 2 23 360 382 359 382 0.96 8 19 0.025 2.4 9.3 0.7 3 20 388 405 387 407 0.93 9 19 0.00079 0.075 14.1 0.6 2 21 412 431 411 434 0.94 10 19 0.29 28 6.0 2.2 3 23 444 465 443 465 0.93 11 19 0.00056 0.054 14.5 3.1 1 23 470 493 470 493 0.92 12 19 0.00022 0.021 15.8 1.2 2 23 504 526 503 526 0.96 13 19 0.016 1.5 10.0 1.3 1 23 551 574 551 575 0.94 14 19 0.78 75 4.6 0.8 2 23 581 602 580 602 0.89 15 19 0.22 21 6.4 1.2 2 23 609 630 608 630 0.96 16 19 5.4 5.2e+02 2.0 0.4 3 23 638 660 636 660 0.89 17 19 4.5 4.3e+02 2.3 0.7 2 23 668 689 667 689 0.91 18 19 0.013 1.2 10.3 0.1 1 23 696 718 696 718 0.97 19 19 0.15 14 6.9 2.0 1 23 724 747 724 747 0.96
Sequence Information
- Coding Sequence
- ATGGCAAATCCAGTAGGCGTTGAGGATTTATCCTTGAAAAGAAGAGATCCGACCACTTTCTTGCCAGAAGAGGAAATGTCATATGAAATTAAGGCTAAAAAGAAAAAGAAAAAAAAGAAACACCAACAAGAGGACCCGTTCAAAGATATAGAAGAGAAGACTGTGCATACAACAGAAATATCTTTTGATCCGGAAGTTAACATTAAGGTTGAGAATATAGAAGTCGAATTGGATTTTAATGATTTCACCAATGACAATGGGCTAATGGTGGAAGGTCCTCAAAGTGAAGACAGTCAAGAACCTGCAATCAAATTAGAACAACAGAGTAGGGAAGCTGTAATTTTAACATTTGAGAGTGTTGTCAGTGATAAAACAGTGTTTACTTATAATGAAAGTAATTCGGCTCCCGTGGAGCCCGTTCATGTTTGTAAAATATGCCACCTAGTGTTCCAATCATTAAAAACTTTAAAAATGCATCAGAAGAGAAAGCACAAAGTGTTTAGAAGGTCTTTTAAGCATGTCTGTAATGACTGTGGGATGTCATACGAACAGAAGACAAGCCTGATAGCTCATATTAAGAGAAAACACGGACCAGATTCAGTGCCAGATGATAGAGAGGAGAGAACTTGTGATATTTGCGCTCTAGTGTTTAAAGGAATGACAAGGTTACGGATGCACATGCGAAGGAAACATGGGTCATTTGAAGATTCATTCCGACATGTGTGCAAAGACTGCGGGCTGACCTATGACAAATACAGGAGTTTAATTGTCCATATACAAAGGAAGCATATGCCAGTTAAGAAACCAACTATCAACCAGTGGTTCAACTGTCCATTTTGTCCAAAAGCTTTTACCAAACGTGAGACTTATGCTAGACATGTACAAAGAAAACATAGGATAAATGACGAAGACAATATTAAAGATGAAAATGTGGATCAGGATTTGTTAGAAAGCTGCAAGAATGAGGAAACTGGTGAGATATCTTGCAGAGAATGTCCGTTGATGTTCTCTTCTCTAAATTATCTGAAACTTCACATGAGGCGAAAACATAATGCTTTGAAGGAAGACTTCAGACTGAAATGTAGAATTTGTAATCTGTCATACGATAAGATAGAGAGTTTGAAGCGCCATATAAGAAGAAAACACGATAAAGGTTCGTTTTGCGAAGTGTGCAATAAACAATTTGATACTAGAGAATTATATTTAAATCATACCCACGTTAAAATGGTTAAAGAATGTCCCATATGTGGACTAATTTTTTCGTCCAAAGTTGGTTTAGGTAAACATTTAAGATGTACACATAAAATAGATGCTCCTAAAACTGTGTTCTGCAATCTGTGCAATGAAGGATTCCATGATAAAAGGCAACTGAAGCCCCACTTTATGAAAGTGCATTTAAAAGTGTCATACACTTGTCGTTACTGCAAGAAAGTTTTCAAAGCGAAAGAGAGTTACAGACGCCATGTTATATTCAAACACCCTGTGAATAATATTAGTAATCCGTCACAAAAATGTGAGCAATGCACACAGACATTCTCAGATGAGTTGGAATTATGTCGACATATAAATATCGCTCACGGGAAGCCAACAGAAGTTCCAAACTCAGAAGTGGTTGTTGTTAAGAAAGAGGAGGTAGACTTTAAAGAATCCTTTCAATGTTCAAAATGTCCAGAAGCTTATTTGACGTGGCAAGAGCTTAGGACACACTATGAACAAAATCACCATATCATAGAAGATACACAGTGTCAGATTTGTGGTGAAATAATACCTGGAAGAGACCTTCAGAAGCACTTAAAGACCGTCCATACAGAAGAAACAATGTTGGAATGCAAGTACTGTGAATTCAAAACTACAATACGAGCAAGTATGACTCAACATACACTACGACACAAGAACGCTACAACTTTAAACTGTGACATTGAAGGCTGCAAGTACAAAACATTCTACGAAGGTGCTATGGTGAAACACAAGAAGAAACACAGTGAGCAGGGAGTCAAGTTACAGTGCTCCCAATGTTCCTTCCAGACAATGAACAAATATGTGCTGAAGTACCATGAAGAAGCACATATGACAGGGAAGAAGAAGTACGCTTGTGACCAATGTGACTATGCAACAATCCTACCCGCTAACCTTGTTCAACACAGGTACAAGCATTCCGCTGAAAAAAGGTTCAAGTGTGAGGTGTGTCCGTTTGCAACCAAGTACAACACATCGCTTCGCTTCCATGTGAAGAAGAAACACTGTGATCTCCCATCTTTTAGTTAA
- Protein Sequence
- MANPVGVEDLSLKRRDPTTFLPEEEMSYEIKAKKKKKKKKHQQEDPFKDIEEKTVHTTEISFDPEVNIKVENIEVELDFNDFTNDNGLMVEGPQSEDSQEPAIKLEQQSREAVILTFESVVSDKTVFTYNESNSAPVEPVHVCKICHLVFQSLKTLKMHQKRKHKVFRRSFKHVCNDCGMSYEQKTSLIAHIKRKHGPDSVPDDREERTCDICALVFKGMTRLRMHMRRKHGSFEDSFRHVCKDCGLTYDKYRSLIVHIQRKHMPVKKPTINQWFNCPFCPKAFTKRETYARHVQRKHRINDEDNIKDENVDQDLLESCKNEETGEISCRECPLMFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSFCEVCNKQFDTRELYLNHTHVKMVKECPICGLIFSSKVGLGKHLRCTHKIDAPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHVIFKHPVNNISNPSQKCEQCTQTFSDELELCRHINIAHGKPTEVPNSEVVVVKKEEVDFKESFQCSKCPEAYLTWQELRTHYEQNHHIIEDTQCQICGEIIPGRDLQKHLKTVHTEETMLECKYCEFKTTIRASMTQHTLRHKNATTLNCDIEGCKYKTFYEGAMVKHKKKHSEQGVKLQCSQCSFQTMNKYVLKYHEEAHMTGKKKYACDQCDYATILPANLVQHRYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249896;
- 90% Identity
- -
- 80% Identity
- -