Tobl018542.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000436.1:1454638-1457323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.23 12.5 5.2 1 23 140 163 140 163 0.97 2 17 1.2e-05 0.001 19.9 1.0 1 23 172 195 172 195 0.96 3 17 0.015 1.3 10.2 0.8 2 23 208 230 208 230 0.97 4 17 0.0016 0.14 13.2 3.6 1 23 239 262 239 262 0.96 5 17 6.9e-05 0.0061 17.5 1.2 1 23 274 297 274 297 0.96 6 17 5.2e-05 0.0046 17.9 0.6 2 23 327 349 326 349 0.96 7 17 0.00034 0.03 15.3 1.3 2 23 359 381 358 381 0.96 8 17 0.058 5.1 8.3 0.6 3 19 387 403 386 406 0.93 9 17 0.0015 0.13 13.3 0.6 2 21 411 430 410 433 0.94 10 17 0.37 32 5.7 2.5 3 23 443 464 442 464 0.93 11 17 0.0036 0.32 12.1 5.7 1 23 469 492 469 492 0.93 12 17 6.5e-05 0.0057 17.6 1.6 2 23 503 525 502 525 0.96 13 17 0.0049 0.43 11.7 0.7 1 23 550 573 550 573 0.94 14 17 4.5 4e+02 2.3 0.9 2 23 580 601 579 601 0.80 15 17 0.1 8.7 7.5 1.0 2 23 608 629 607 629 0.96 16 17 0.0086 0.75 10.9 0.1 1 23 695 717 695 717 0.97 17 17 0.57 50 5.2 2.8 1 23 723 746 723 746 0.96
Sequence Information
- Coding Sequence
- ATGGCAAATTCAGGCGACGTTGAAGACTTCTCTATGATAAGGAAAGATCCCACTTCTTTCTTGCCAGAAGAAGAAATGTCGTATGAAATTAaagcaaaaaagaaaaaaaagaagaaacacAAACAGGAGGATCCTTTTAAGgatattgaagataaaattGTACAGCCGACAGAAATAGCTCTCGATCCAGAAGTTAACATTAAAGTAGAGAATATTGAGGTAGAATTGGATTTTAATGATtTCACGAACGACAATGGTCTTATGGTGGAAGGTCCTCAAAGTGAGGACAGTCAAGAACCCGCCATAAAACTGGAGCAACAGAACCGTGAAGCTGTTATTTTAACTTTCGAGAGCGTAGTCAGTGATAACAAAGTGTATGGTTATAAACAGAACCGTTTGAAACCCGTGGAGAGGGTACATGTGTGTAAAATATGCCATCTAGTGTTTCAATCTCTGAAAACTTTACAAATGCACCAGAAAAGGAAGCATAAAGTTTTTAGGCGGTCCTTTAAACACATATGTAATGACTGCGGTATGTCCTATGAACAGAAGACTAGCTTAATTGCACACATAAAGCGTAAACACGGCCCAAACTCCGTGCCGGATGACAAAGAGGAGAGAACGTGTGATATTTGTGCTCTAGTGTTTAAAGGAATGACGAGGTTACGGATGCATATGCGGAGAAAACACGGGTCCTTCGAGGATTCATTTAGGCATATTTGCCAACATTGCGGTCTGACGTACGACAAGTACAGAAGTTTGATAGTCCATATGCAGAGGAAGCACATGCCTGTAAAGAAACCGGTGATTGAACAATGGTTTAATTGTCCATTCTGCCCGAAAGCTTTCACAAAACGCGAGACATACGCGAGACATGTGCAGAGAAAACATAGAATCAATGAGGATGAcaataataaacaagtaaaagcAGACCAGAATCTTCTAGAAACTTGTATCAATGAGGAAACCGGTGAAATATCGTGCAGGGAATGTCCGCTGGTGTTTTCGTCCTTGAATTATCTGAAACTGCACATGAGGAGGAAACATAACGCGTTGAAAGAAAACTTCAGGCTCAAATGTAGAATATGTAATTTGTCATACGACAAGATCGAGAGCTTAAAGCGGCACATCAGGAGGAAACACGACAAGGGATCGTTTTGTGAAGTTTGCAATAAACAATTTGATACTAGAGAGATGTATTTAAATCACTCTCACGTGAAAGTGATTAAGGAGTGTCCAGTTTGCGGGCTGATATTCTCGTCTAAGGTCGGATTAGGCAAACATTTGCGGTGTACCCACAAGATAGACGCACCAAAAACTGTGTTCTGTAAGCTGTGCAATGAGGGCTTCCACGATAAGAGACAACTGAAGCCTCACTTCATGAAAGTGCATTTAAAGGTTTCGTACACATGCTGTTACTGCAAGAAAGTATTTAAAGCGAAAGAGAGTTACCGACGCcatgtattatttaaacatcCTGCTAAGGAAATTATTGATGAGTTACAAAAGTGCGAGCACTGTACAGAGACATTCCCAAACGAAGTGGAACTCTGTCGGCACATTAATGTGGCACACGGGAAATCACAGGAAGTACCGAACGACGAAGTAGTTGTGGTAAAAAAAGAGGAAATAGACTTCAGAGAATCGTTTCAATGCTCAAAATGTCCCGAATCGTATCTGACGTGGCAAGACCTCCGGTCGCACTACGAACAAAACCATCAAATTATTGAGGACACCCAGTGTCAGATATGCGGCGAAATTATACCTGGTAATGAACTCCAGAAGCATTTCAAAACTGCCCACATGGAGGACTCAATGCTGGAATGCAAGTACTGCGAATTTACGACAACGATACGGGCCAGCATGACACAGCACACGTTGCGGCATAAGAACGCGACGACCCTCCACTGCGACTTCGAAGGTTGCAAGTACAAGACCTTCTACGAGGGTGCGATGGTGAAACATAAGAAGAAACACACGGATCTGGGTGTGAAGCTGCATTGCAAACAGTGCACCTTCCAAACGATGAATAAGTACGTACTGAAATACCACGAAGAGGCGCACAGGACCGGGAAGAAGAAATACGCGTGCGACAAGTGCGACTACGCGACGATACTGCCCGCGAACCTGGTGCAGCACAGGTACAAGCACTCCTCGGAGAAGAGGTTCAAGTGCGAGGTGTGCTCGTTCGCGACCAAATACAACACGTCGCTGCGGTTCCAcgtcaaaaaaaaacattgtgatcTCCCATCATTCAGTTGa
- Protein Sequence
- MANSGDVEDFSMIRKDPTSFLPEEEMSYEIKAKKKKKKKHKQEDPFKDIEDKIVQPTEIALDPEVNIKVENIEVELDFNDFTNDNGLMVEGPQSEDSQEPAIKLEQQNREAVILTFESVVSDNKVYGYKQNRLKPVERVHVCKICHLVFQSLKTLQMHQKRKHKVFRRSFKHICNDCGMSYEQKTSLIAHIKRKHGPNSVPDDKEERTCDICALVFKGMTRLRMHMRRKHGSFEDSFRHICQHCGLTYDKYRSLIVHMQRKHMPVKKPVIEQWFNCPFCPKAFTKRETYARHVQRKHRINEDDNNKQVKADQNLLETCINEETGEISCRECPLVFSSLNYLKLHMRRKHNALKENFRLKCRICNLSYDKIESLKRHIRRKHDKGSFCEVCNKQFDTREMYLNHSHVKVIKECPVCGLIFSSKVGLGKHLRCTHKIDAPKTVFCKLCNEGFHDKRQLKPHFMKVHLKVSYTCCYCKKVFKAKESYRRHVLFKHPAKEIIDELQKCEHCTETFPNEVELCRHINVAHGKSQEVPNDEVVVVKKEEIDFRESFQCSKCPESYLTWQDLRSHYEQNHQIIEDTQCQICGEIIPGNELQKHFKTAHMEDSMLECKYCEFTTTIRASMTQHTLRHKNATTLHCDFEGCKYKTFYEGAMVKHKKKHTDLGVKLHCKQCTFQTMNKYVLKYHEEAHRTGKKKYACDKCDYATILPANLVQHRYKHSSEKRFKCEVCSFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249896;
- 90% Identity
- iTF_00249896;
- 80% Identity
- -