Bodo003221.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- stc
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000836.1:2397306-2401178[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8 1.4e+04 -3.9 1.6 15 19 310 314 309 314 0.81 2 15 0.081 6.5e+02 0.3 0.3 4 10 343 349 342 349 0.95 3 15 8e-07 0.0064 16.3 15.9 3 19 356 372 355 372 0.93 4 15 1.4 1.1e+04 -3.6 0.8 6 10 398 402 397 402 0.88 5 15 0.003 24 4.9 8.0 3 18 410 425 408 426 0.86 6 15 0.16 1.2e+03 -0.6 2.4 6 11 456 461 455 464 0.84 7 15 4.8e-07 0.0038 17.0 14.0 1 18 466 483 466 484 0.92 8 15 2.2e-05 0.17 11.7 13.7 4 19 532 547 525 547 0.88 9 15 0.0074 59 3.7 8.6 1 11 587 597 587 598 0.96 10 15 2 1.6e+04 -4.2 1.2 4 10 602 608 602 608 0.84 11 15 4.9e-09 3.9e-05 23.4 14.5 1 18 614 631 614 632 0.97 12 15 1.1 8.4e+03 -3.2 0.5 6 10 661 665 660 666 0.70 13 15 4.9e-05 0.39 10.6 6.9 10 18 679 687 676 688 0.89 14 15 1.5e-05 0.12 12.2 15.9 1 16 724 739 724 749 0.91 15 15 2.3e-05 0.18 11.7 10.7 1 18 756 774 756 775 0.89
Sequence Information
- Coding Sequence
- ATGTCTAATCGTAACGGCATTACCAGCAACGAGTATGTCGGTTTCGACCAGTTTATGTTGGAGCAAAATTTTCTGCCTAATCCTCAAGTTTACTCCAATACCGGCCTACCATACTACGTTCAACCGAATTTTACCGTTCATCCGACATATCCTCAGCAACCGTCTAATCAAGCTGCACCACACGAATCGACTGAAGATATTGTTCGGAACTCGAATCTGTTGCCAACTGCCAGTGAATTTGTACCGCAAACTTTTTCGGCTACTGGTGACCAAGCAGTACAGTCAATGTCGTCGGCGTCGTCACAGTTAAATGTTGAGAATGAGGCCAAACAGGGAGCAATTAGGAAGACATCATCGAGTCGATATccgaaaaataaggaaaataatcAAGGTGGTCGTGGCGTTAGGCGCAACGAAAGGACTCGAGACTGGAACCAGCGAGTGGAAAATCGTACAGCTGGTAGTGGACGAACAGCCAGTCAATATCAAAATGATGATCGCGGCACGTATGCCCGTCAAAAttatccgaaaacaaattatgaTCGTGGGATGTACCGCAACGGCGAAGTTGACAATCGTCGAAGCCATCACTACGATCGCTCGAGGAACAACTATTATTCGGAAAATTATAACGAAAAGAAATCGCATCAAAACTCACACGGTTTCGATTCCAAAGGTGCGTCGAGCTCCACTAAAGGTGCTGAAAAGTTCGTAGTTGCTGCCAAGCCCAGCGAGGTGGACAACAAATGTTCGCAACGTGAAAAACTCGTCCGAGAAATCGATGCCGGCAAATTGGAATGCCTCATTTGTTGCGAGAATATTAAGACGTGGAATCAGACATGGAACTGTAGCAACTGTTTCCACATCATCCATTTGAATTGTGTCATCAAGTGGGCGAACAGTTCAGGCAATAGCGGTAGTTGGAGGTGTCCGGCCTGTCAGAATATTTCCGAAACAATACCGAAGCATTATTACTGTTTCTGCAAGAAACTGCAGAATCCCGAATACAATCGCAGTGACATAGCGCACAGTTGTGGAGAGTTGTGTGAGAAAACTGACGGATGCGAGCACAGTTGCAAATTGTTGTGTCATCCAGGTCCTTGCCCTCCATGTCAGGTAATGGTTACGCGGAAGTGTGGTTGCGGTCGCACTCAGAAAACCATGCAATGCTGTCAGAAAGCACAAATCCAATGTGAGGACATATGTGACAAGGAGCTAAATTGTGTGGCACATCGATGCAGTCAGAAATGTCATTTATGGAAATGCAACGACTGCGAAGTGATGGTCGAACATAAGTGCTATTGCGGTAAGGATCGCAAGGAGATGCTCTGCACCCGGGAAAATAACCAAACGTTGAAATACTCGTGCGGTAAGCCGTGCCACCATCAGCTGAGCTGCAAAAATCATAAATGCAAGGAGACCTGTCATTCGGGTGAATGTGGCGAATGCAATTTAAGTCCCGAATACGTTACATCGTGTCCATGTGGAAATACGCCGCTGCTTAGTGGTGACCGAAAATCGTGCTCTGATCCGATTCCCCTTTGTAATTCGACGTGCGGCAAAGTCCTGAAATGTGGACCACCAAACAAACCACATAAGTGCgcaatgaaatgtcacagcGGTACTTGTGGTCCGTGCAGCAAAGAAACGGCCGTAAAGTGTCGCTGTGGTAACATGGACCAAATGATAAAGTGTCGTCAATTACAGACACGAGCTGATGATGCCCGTTGCAAGAAACGATGCAAAGTAGTGCGAAGTTGCGGTAAACATAAATGCAATTCTGAATGCTGCATAGACATCGATCACATCTGTCCAACAGTCTGCAACAACCGTTTGCCTTGTGGTAAGCATAAGTGCGATCAGCCGTGTCACAGAGGCAAGTGTTCGCCTTGCTACCGCTCGTCGTTCGATGAACTGTATTGTGAATGTGGAGCCAATGTCATTTATCCACCGGTACCTTGTGGAACAAAGCGACCAGCCTGTGATCGACCCTGTTCACGTCCTCAATCCTGTGATCATCCAGTTCAGCACAATTGCCATTCGGGTAATTGTCCACCTTGCATGGCATTCACTACTCGATACTGCCACGGACAACATGAACAACGTATGACCATTCCATGTAGCCACGAAGACTTCAGCTGTGGTATGCCTTGCGGAAAGCCGTTGCTTTGTGGCCAACATAAATGTTTGATGAAATGTCACACTGGTCCGTGCGAGACGGAGCGCAGCGAATGCAAACAACACTGTCCCAAGGTACGGAATCTCTGCGGACATCTTTGCAATGCTCCGTGTCACATTGGCGATTGTCCCGAAACGGCTTGCCGAGAAACAGTCGAAGTGTCGTGTGAATGTGGTGGCCGCAAACAGAATCGCAGTTGTTACGATTTTTCGAAAGAATACCGTCGCATCACCACGGCCAAGTTGGCCAGTTCCATGGAGGACATGCAACGTGGCAATTCGGTCGAACTGTCTGATCTACTTGGCCcgatgaaaatttccaaaactatCGAATGCAACGATGAGTGCCGGGCGAAACGTATGGCTATCGGCCTTCAAATACAGAAACCGGAGATAACATCGAAACTGGCACCGAAATATTCCGAGTTTGTACGCGGTTGGGCGAAAAAGGATCCAACTTTGGTGGGAATGATTCATGAAAAGCTGTCAGAGCTGGTTAAGCTGGCTAAGGAAAGTAAACAGCGATCTCGCAGTCATTCGTTTCCAACGATGAATCGAGAAAAGCGACAGCTCGTTCACGAGATGTGCGCAATGTTTGGCGTTCAGTCCGTTGCCTATGACGCGGAACCAAATCGTAATGTTGTAGGCTAG
- Protein Sequence
- MSNRNGITSNEYVGFDQFMLEQNFLPNPQVYSNTGLPYYVQPNFTVHPTYPQQPSNQAAPHESTEDIVRNSNLLPTASEFVPQTFSATGDQAVQSMSSASSQLNVENEAKQGAIRKTSSSRYPKNKENNQGGRGVRRNERTRDWNQRVENRTAGSGRTASQYQNDDRGTYARQNYPKTNYDRGMYRNGEVDNRRSHHYDRSRNNYYSENYNEKKSHQNSHGFDSKGASSSTKGAEKFVVAAKPSEVDNKCSQREKLVREIDAGKLECLICCENIKTWNQTWNCSNCFHIIHLNCVIKWANSSGNSGSWRCPACQNISETIPKHYYCFCKKLQNPEYNRSDIAHSCGELCEKTDGCEHSCKLLCHPGPCPPCQVMVTRKCGCGRTQKTMQCCQKAQIQCEDICDKELNCVAHRCSQKCHLWKCNDCEVMVEHKCYCGKDRKEMLCTRENNQTLKYSCGKPCHHQLSCKNHKCKETCHSGECGECNLSPEYVTSCPCGNTPLLSGDRKSCSDPIPLCNSTCGKVLKCGPPNKPHKCAMKCHSGTCGPCSKETAVKCRCGNMDQMIKCRQLQTRADDARCKKRCKVVRSCGKHKCNSECCIDIDHICPTVCNNRLPCGKHKCDQPCHRGKCSPCYRSSFDELYCECGANVIYPPVPCGTKRPACDRPCSRPQSCDHPVQHNCHSGNCPPCMAFTTRYCHGQHEQRMTIPCSHEDFSCGMPCGKPLLCGQHKCLMKCHTGPCETERSECKQHCPKVRNLCGHLCNAPCHIGDCPETACRETVEVSCECGGRKQNRSCYDFSKEYRRITTAKLASSMEDMQRGNSVELSDLLGPMKISKTIECNDECRAKRMAIGLQIQKPEITSKLAPKYSEFVRGWAKKDPTLVGMIHEKLSELVKLAKESKQRSRSHSFPTMNREKRQLVHEMCAMFGVQSVAYDAEPNRNVVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246026; iTF_01266589;
- 90% Identity
- iTF_00246026;
- 80% Identity
- -