Phyg038349.2
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- stc
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:60448092-60457600[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8 5.2e+04 -4.0 1.6 15 19 314 318 313 318 0.81 2 14 0.13 2.4e+03 0.3 0.3 4 10 347 353 346 353 0.95 3 14 1.5e-06 0.029 16.0 15.0 3 19 360 376 359 376 0.93 4 14 2.1 4e+04 -3.6 0.8 6 10 402 406 401 406 0.89 5 14 1.2e-05 0.22 13.2 7.9 1 18 412 429 412 430 0.95 6 14 0.24 4.6e+03 -0.6 2.4 6 11 460 465 459 468 0.84 7 14 8.5e-07 0.016 16.8 13.5 1 19 470 488 470 488 0.92 8 14 1.3e-05 0.25 13.0 15.0 4 18 536 550 529 551 0.88 9 14 0.012 2.2e+02 3.6 8.6 1 11 591 601 591 602 0.96 10 14 1.4e-09 2.7e-05 25.7 12.3 1 18 618 635 618 636 0.97 11 14 2.1 4e+04 -3.6 0.5 6 10 665 669 664 669 0.80 12 14 0.00059 11 7.7 10.0 10 18 683 691 674 692 0.87 13 14 4.6e-05 0.87 11.3 13.4 1 16 728 743 722 754 0.86 14 14 8.1e-06 0.15 13.7 11.9 1 18 760 778 760 779 0.89
Sequence Information
- Coding Sequence
- ATGTCGAATAGTAACGGTATTTCGAACAACGATTATGTTGGATTCGATCAATTTATGttagagcaaaattttttggccAATCCTCAACTTTGTTCCAACAACAGCATACCGTATtatgctcagcaaaatttttcaatgaacgCTACATATCCTCAATTATCAAACGAAATTCCTCAATTAAACGAAGTGAATAGAGAAGACATTGTGCGTAACTCCAATTTGTTACCAACGGCAGATGAGTTTGTTCCACATGTCAATAACTTCCACGATCAAGCCGTACAATCGATGTCCACGCTACAACAAAGTGCTTCTGGTGGAACAAGTGAATCGAAACACGGAGCAATCAAGAAAACGTCGAACCGTTATccgaaaaataaggaaaatggTCAAGGAAGTCGCGGTCCGAGGCGCAATGATAGGAGTAGAGAATGGAATCATCGTGCGGAAAATCGAACAGCTGGCAGTGGACGTACTGCTAGTCAGTATCAGCATGATGATCGAAACGGTGGTTACGGTCGTCAGAACTATCACAACtatcaacaaaaatcgaattacGACCGAGGTGTGTATCGAAACAATGATGTGGATAATCGGCGAGGCCATCATAATGATCGTTTTCGCAACAATTATTACTCAGACAATTACAATGATAAAAAGTCGCATCAGCATTCCCATGGATTCGAGTCGAAAACTGTAACAAATTCCAGTAAGGCCGTCGAAAAAGTTGTGACTGTTGTTAAGCCCGAGACGGACAACAAATGTTCGCAACGTGATAAACTGACTAGAGAAATCGAAGCGGGAAAATTGGAATGTCTTATTTGCTATGAGAATATCAAAACGTGGAACCAAACGTGGAATTGTAGCAATTGCTTTCATATTTTCCATTTGAATTGCGTTATCAAATGGGCCAACAGTTCGGCTAGTGGTGGCAGTTGGCGTTGTCCTGCTTGCCAAAACATTTCTGAGACAATACCAAAACATTATTATTGTTTCTGCAAGAAAATGCAAAATCCAGAATACAATCGCAGTGACATAGCTCACAGTTGCGGAGAATTATGTCAGCGGACCGACGGATGTGAACATAGCTGCAAATCATTGTGTCATCCTGGTCCGTGTGCTCCATGTCAGGTGACAGTCACACGAAAATGTGGCTGTGGTCGTCGTCAAAAGACGATGCAATGTTGTCAAAAGATTCAAATCGAATGCGACGAATTATGCGATAAAACGTTAAATTGCGGCATTCATCATTGTAAACAGAAATGTCATTTTTGGGATTGCTACCAATGCCTAGTTATGGTTGAGCACAAATGTTACTGTGGAAAGGAGCGCAAAGAAATGGTTtgcaataaagaaaataatcAATCGCTAAAGTATTCGTGTGGTAAACCGTGTCACCATCAATTAAGTTGTAAAAATCATAAATGTAAAGAGACATGTCATGCTGGTGAATGTGGGGAATGTACCTTGAGTCCAGAATCTGTCACTTCGTGTCCTTGTGGAAGTACGCCTCTACTGAGTGGAGAACGAAAATCTTGTTCTGATCCGATTCCGTTGTGTAATTCAATTTGTGATAAGCCGTTGAAATGTGGACCGCCCAACAAACCTCACAAATGTGCGATGAAGTGTCACAGCGGACCGTGCGGCCCTTGCGGCAAAGAAACCGCAGTTAGATGTCGTTGTGGTAACATGGATCAAATGATCAAGTGTCGTCAGCTGCAGACGCGTGCCGATGATGCTCGCTGCAAGAAGCGCTGTAAATCGGTTCGCACCTGTGGAAAGCACAAATGTAACTCTGAATGCTGCATTGACATCGATCACATTTGTCCAACAATTTGCAACAATCGATTGCCTTGCGGGAAGCACAAGTGCGACCAAACGTGTCACAGGGGAAAGTGTATGCCTTGCTATCGATCGTCTTTCGACGAACTATACTGTGAATGTGGGGCAAATGTTATTTATCCGCCCGTGCCATGTGGAACGAAAAAGCCTGCCTGTGATCGACCATGTTCGCGTGTACAAACCTGTGAGCATCCCGTTCAGCACAATTGCCATTCGGGAAATTGTCCACCATGTATGGCGTTCACGACCCGATATTGTCACGGCAAGCATGAACAACGTATGACCATTCCATGCAGCCAAGAAGATTTTAGTTGTGGCATGCCTTGCGGAAAGCCGTTACTTTGCAATCAGCATAAATGTCAGATGAAGTGTCACGTTGGACCATGTGAATCGGAACGAGGCGAATGTAAGCAAAATTGTCCCAAAATACGAAATCTCTGCGGGCATCTTTGTAATGCTCCGTGTCACACCGGTGATTGTCCCGAAACGGCTTGTCGAGAAACAGTCGAAGTTTCTTGTGAATGTGGTGGTCGTAAACAAAATCGCAGCTGCTTCGATTTTTCGAAAGAGTATCGTCGGATTACCACCGCCAAATTAGCCAGCTCTATGGAAGACATGCAGCGTGGCAATTCCGTTGAATTAGCTGATTTGCTCGGTCCAATGAGAATATCGAAGACCATCGAATGCAATGATGAGTGCCGAGCTAAGCGGATGGCTATTGGACTTCAAATTCAGAAACCGGAAGTGAATAAACTTGCCCCCAAATACTCCGAATTCTTGCGTAGTTGGGCTAAGAAAGATCCAACCTTAGTTGGAACAATTCATGATAAGTTGACTGAGCTTGTGAAGTTAGCAAAGGATAGCAAACAAAGATCACGCAGCCATTCGTTTCCAACAATGAATCGAGAAAAACGTCAGCTGGTTCATGAGATGTGTGCTATGTTTGGTGTTCAGTCTGTTGCCTATGACGCAGAGCCCAATCGTAACGTTGTAGCTAGTGCTACAAAGGAGACTACATGGTTGCCAAGTATGAGCATTTTTGAAGTCTTACAAAGGGAAAGTGGACAAAGGCGTATTCCAGTGCCTAGTAATAATGCGTGGGGAGTTAAGCGTTGA
- Protein Sequence
- MSNSNGISNNDYVGFDQFMLEQNFLANPQLCSNNSIPYYAQQNFSMNATYPQLSNEIPQLNEVNREDIVRNSNLLPTADEFVPHVNNFHDQAVQSMSTLQQSASGGTSESKHGAIKKTSNRYPKNKENGQGSRGPRRNDRSREWNHRAENRTAGSGRTASQYQHDDRNGGYGRQNYHNYQQKSNYDRGVYRNNDVDNRRGHHNDRFRNNYYSDNYNDKKSHQHSHGFESKTVTNSSKAVEKVVTVVKPETDNKCSQRDKLTREIEAGKLECLICYENIKTWNQTWNCSNCFHIFHLNCVIKWANSSASGGSWRCPACQNISETIPKHYYCFCKKMQNPEYNRSDIAHSCGELCQRTDGCEHSCKSLCHPGPCAPCQVTVTRKCGCGRRQKTMQCCQKIQIECDELCDKTLNCGIHHCKQKCHFWDCYQCLVMVEHKCYCGKERKEMVCNKENNQSLKYSCGKPCHHQLSCKNHKCKETCHAGECGECTLSPESVTSCPCGSTPLLSGERKSCSDPIPLCNSICDKPLKCGPPNKPHKCAMKCHSGPCGPCGKETAVRCRCGNMDQMIKCRQLQTRADDARCKKRCKSVRTCGKHKCNSECCIDIDHICPTICNNRLPCGKHKCDQTCHRGKCMPCYRSSFDELYCECGANVIYPPVPCGTKKPACDRPCSRVQTCEHPVQHNCHSGNCPPCMAFTTRYCHGKHEQRMTIPCSQEDFSCGMPCGKPLLCNQHKCQMKCHVGPCESERGECKQNCPKIRNLCGHLCNAPCHTGDCPETACRETVEVSCECGGRKQNRSCFDFSKEYRRITTAKLASSMEDMQRGNSVELADLLGPMRISKTIECNDECRAKRMAIGLQIQKPEVNKLAPKYSEFLRSWAKKDPTLVGTIHDKLTELVKLAKDSKQRSRSHSFPTMNREKRQLVHEMCAMFGVQSVAYDAEPNRNVVASATKETTWLPSMSIFEVLQRESGQRRIPVPSNNAWGVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246866;
- 90% Identity
- -
- 80% Identity
- -