Bcop005547.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- stc
- Assembly
- GCA_014529535.1
- Location
- NW:278159-282043[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8 1.5e+04 -4.0 1.6 15 19 308 312 307 312 0.81 2 15 0.084 6.8e+02 0.3 0.3 4 10 341 347 340 347 0.95 3 15 8.3e-07 0.0067 16.3 15.9 3 19 354 370 353 370 0.93 4 15 1.5 1.2e+04 -3.7 0.8 6 10 396 400 395 400 0.88 5 15 0.0016 13 5.8 8.0 1 18 406 423 406 424 0.89 6 15 0.16 1.3e+03 -0.6 2.4 6 11 454 459 453 462 0.84 7 15 5e-07 0.004 17.0 14.0 1 18 464 481 464 482 0.92 8 15 6.1e-06 0.049 13.5 13.2 4 19 530 545 523 545 0.88 9 15 0.0077 62 3.6 8.6 1 11 585 595 585 596 0.96 10 15 2 1.6e+04 -4.3 1.2 4 10 600 606 600 606 0.84 11 15 5.1e-09 4.2e-05 23.3 14.5 1 18 612 629 612 630 0.97 12 15 1.1 8.9e+03 -3.3 0.5 6 10 659 663 658 664 0.70 13 15 5.1e-05 0.41 10.6 6.9 10 18 677 685 674 686 0.89 14 15 1.9e-05 0.15 11.9 15.9 1 16 722 737 722 747 0.90 15 15 9.4e-06 0.076 12.9 11.0 1 18 754 772 754 773 0.89
Sequence Information
- Coding Sequence
- atgTCTAATCGTAACGGCATTACCAGCAACGACTATGTCGGTTTCGACCAGTTTATGTTAGAGCAAAATTTTCTGCCTAATCCTCAAATCTACTCCAATACCGGCCTACCATACTACGTTCAACCGAATTTCACCGTTCATCCGACATATCCTCAGCAACCGTCTAATCAAATTCCACAACACGAAACGACTGAAGATATTGTTCGGAACTCGAATCTGTTGCCGACTGCAAATGAATTTGTGCCGCAGACTTTTCCGGCTACTGGTGACCAAGCAGTACAGTCAGTGTCGTCGACCCAGTTAAATGTTGAGAATGAGGCCAAACAGGGAGCAATTAGGAAGACATCATCGAATCGATATccgaaaaataaggaaaataatcAAGGTGGTCGTGGCGTAAGGCGCAACGAACGGAATCGAGACTGGAACCAGCGAGTGGAGAACCGTACAGCTGGTAGTGGACGTACAGCCAGTCAATATCAAAATGATGATCGCGGCACGTACGGCCGTCAAAATTATCCGAAAGCAAATTATGATCGTGGAATGTACCGCAACGGCGAATCTGACAATCGTCGCAGCCATCACTACGATCGCTCAAGGAACAACTATTATTCGGAAAATTATAACGAAAAGAAATCGCATCAGAACTCACACGGTTTCGACTCCAAAGGTGCGTCGAGCTCCACTAAAGGTGCGGAAAAATTCGTCGTTGCTGCCAAGCCCAGCGAGGTGGACAACAAATGTTCGCAACGTGAAAAACTCATCCGAGAGATCGATGCCGGCAAATTGGAATGCCTCATTTGCTGCGAGAATATTAAGACGTGGAATCAGACATGGAATTGTGGCAACTGTTTCCACATCATACATTTGAATTGTGTCGTCAAGTGGGCGAACAGTTCAGTCAATAGCGGCAGTTGGAGGTGCCCGGCCTGTCAGAATATTTCCGAATCGATACCGAAGCATTATTACTGTTTCTGCAAGAAACTCCAGAATCCCGAGTACAATCGCAGTGACATAGCGCACAGTTGTGGAGAGTTGTGCGAGAAAACTGACGGATGCGAGCACAGTTGCAAATTGTTATGTCATCCAGGTCCTTGCCCTCCATGTCAGGTAATGGTGACACGGAAATGCGGTTGCGGTCGCACTCAGAAAACCATGCAATGCTGTCAGAAAGCACAAATCCAATGCGAGGACATCTGTGACAAGGAGCTAAACTGTACGGCACATCGATGCAGTCAGAAATGCCATTTATGGTCATGCAACGATTGCGAAGTGATGGTCGAACATAAGTGCTATTGCGGAAAGGATCGCAAGGAGATGCTCTGCACCCGAGACAATAACCAAACGTTGAAATACTCGTGCGGTAAACCGTGTCACCATCAGCTGAGCTGCAAAAATCACAAATGCAAGGAGACCTGTCATTCGGGCGAATGTGGCGAATGCAATTTAAGTCCTGCATTCGTTACATCGTGTCCATGTGGAAATACGCCACTGCTTAGTGGTGACCGAAAATCGTGTTCCGATCCGATTCCCCTGTGTAATTCGACGTGCGGCAAAGTGCTGAAATGTGGACCACCCAACAAACCGCATAAGTGTGcaatgaaatgtcacagcggTGCTTGTGGTCCGTGCAGCAAAGAAACGGCCGTTAAGTGTCGCTGTGGTAACATGGACCAAATGATAAAGTGTCGTCAATTACAAACACGAGCCGATGATGCCCGTTGCAAGAAACGATGCAAAGTAGTGCGAAGTTGCGGTAAACATAAATGCAATTCTGAATGCTGCATAGACATCGATCACATCTGTCCAACAGTCTGCAATAACCGTTTGCCTTGTGGTAAGCATAAGTGCGATCAGCCGTGTCACAGAGGCAAGTGTTCGCCGTGCTATCGATCGTCGTTCGATGAACTGTATTGTGAATGCGGAGCAAATGTTATTTATCCACCGGTACCTTGCGGAACAAAGAGACCAGCCTGTGATCGACCCTGTTCACGTCCTCAATCCTGTGATCATCCCGTTCAGCACAATTGCCATTCGGGTAATTGTCCGCCATGCATGGCATTCACCACTCGATACTGCCACGGAAAACACGAGCAACGTATGACCATTCCATGTAGCCAGGAAGATTTCAGCTGTGGTATGCCCTGCGGAAAACCGTTGCTTTGTGGCCAACATAAATGtttgatgaaatgtcacaCTGGTCCGTGCGAGAACGAGCGCAGCGAATGCAAACAACACTGTCCCAAGGTGAGGAATCTCTGCGGACATCTTTGCAATGCTCCGTGTCACCTTGGCGATTGTCCCGAAACGGCTTGCCGGGAAACCGTCGAAGTTTCGTGTGAATGCGGCGGCCGCAAACAGAATCGCAGTTGTTAcgatttttcgaaagaatACCGTCGCATCACCACGGCCAAGCTGGCCAGTTCCATGGAGGACATGCAACGCGGGAATTCGGTTGAACTGGCTGATCTACTCGGTCCgatgaaaatatccaaaaCTATCGAATGCAACGATGAGTGCCGGGCGAAGCGTATGGCAATCGGCCTTCAGCTACAGAAACCGGAGACAACATCGAAACTTGCACCGAAATATTCCGAGTTTGTACGCGGTTGGGCGAAAAAGGATCCAACTTTGGTGGGAATGATTCATGAAAAGCTGTCGGAGCTGGTTAAGCTGGCGAAGGAAAGTAAACAGCGATCTCGCAGTCATTCGTTTCCGACAATGAATCGAGAGAAGCGACAGCTCGTTCACGAGATGTGCGCTATGTTTGGCGTTCAGTCCGTTGCCTATGACGCGGAACCAAATCGTAACGTTGTGGCTAGTGCCACAAAAGAGACGACCTGGTTGCCAAGTATGAGTATTTTCGAGGTGTTACAGAGGGAGAGCGGACAACGACGCATACCAGTACCCAGCAATCATGCATGGGGAGTTAAACGTTAA
- Protein Sequence
- MSNRNGITSNDYVGFDQFMLEQNFLPNPQIYSNTGLPYYVQPNFTVHPTYPQQPSNQIPQHETTEDIVRNSNLLPTANEFVPQTFPATGDQAVQSVSSTQLNVENEAKQGAIRKTSSNRYPKNKENNQGGRGVRRNERNRDWNQRVENRTAGSGRTASQYQNDDRGTYGRQNYPKANYDRGMYRNGESDNRRSHHYDRSRNNYYSENYNEKKSHQNSHGFDSKGASSSTKGAEKFVVAAKPSEVDNKCSQREKLIREIDAGKLECLICCENIKTWNQTWNCGNCFHIIHLNCVVKWANSSVNSGSWRCPACQNISESIPKHYYCFCKKLQNPEYNRSDIAHSCGELCEKTDGCEHSCKLLCHPGPCPPCQVMVTRKCGCGRTQKTMQCCQKAQIQCEDICDKELNCTAHRCSQKCHLWSCNDCEVMVEHKCYCGKDRKEMLCTRDNNQTLKYSCGKPCHHQLSCKNHKCKETCHSGECGECNLSPAFVTSCPCGNTPLLSGDRKSCSDPIPLCNSTCGKVLKCGPPNKPHKCAMKCHSGACGPCSKETAVKCRCGNMDQMIKCRQLQTRADDARCKKRCKVVRSCGKHKCNSECCIDIDHICPTVCNNRLPCGKHKCDQPCHRGKCSPCYRSSFDELYCECGANVIYPPVPCGTKRPACDRPCSRPQSCDHPVQHNCHSGNCPPCMAFTTRYCHGKHEQRMTIPCSQEDFSCGMPCGKPLLCGQHKCLMKCHTGPCENERSECKQHCPKVRNLCGHLCNAPCHLGDCPETACRETVEVSCECGGRKQNRSCYDFSKEYRRITTAKLASSMEDMQRGNSVELADLLGPMKISKTIECNDECRAKRMAIGLQLQKPETTSKLAPKYSEFVRGWAKKDPTLVGMIHEKLSELVKLAKESKQRSRSHSFPTMNREKRQLVHEMCAMFGVQSVAYDAEPNRNVVASATKETTWLPSMSIFEVLQRESGQRRIPVPSNHAWGVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246866;
- 90% Identity
- iTF_00246866;
- 80% Identity
- -