Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000343.1:840242-845570[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.5 1.1e+04 -3.5 0.1 27 45 110 128 106 133 0.62

2 11 0.023 73 3.4 0.1 23 46 162 185 157 192 0.88

3 11 0.054 1.7e+02 2.2 0.0 25 44 192 211 187 219 0.84

4 11 0.0015 4.8 7.2 0.0 26 46 258 278 253 283 0.90

5 11 0.0044 14 5.7 0.1 22 44 282 304 279 312 0.87

6 11 0.02 65 3.6 0.0 26 46 314 334 305 342 0.87

7 11 0.29 9.2e+02 -0.1 0.1 22 43 338 359 333 367 0.86

8 11 0.013 41 4.2 0.2 14 53 358 397 346 398 0.85

9 11 0.011 36 4.4 0.0 22 48 394 420 389 424 0.86

10 11 0.03 96 3.1 0.0 22 44 422 444 419 448 0.91

11 11 0.074 2.4e+02 1.8 0.0 27 47 571 591 564 594 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.5	1.1e+04	-3.5	0.1	27	45	110	128	106	133	0.62
2	11	0.023	73	3.4	0.1	23	46	162	185	157	192	0.88
3	11	0.054	1.7e+02	2.2	0.0	25	44	192	211	187	219	0.84
4	11	0.0015	4.8	7.2	0.0	26	46	258	278	253	283	0.90
5	11	0.0044	14	5.7	0.1	22	44	282	304	279	312	0.87
6	11	0.02	65	3.6	0.0	26	46	314	334	305	342	0.87
7	11	0.29	9.2e+02	-0.1	0.1	22	43	338	359	333	367	0.86
8	11	0.013	41	4.2	0.2	14	53	358	397	346	398	0.85
9	11	0.011	36	4.4	0.0	22	48	394	420	389	424	0.86
10	11	0.03	96	3.1	0.0	22	44	422	444	419	448	0.91
11	11	0.074	2.4e+02	1.8	0.0	27	47	571	591	564	594	0.91

Sequence Information

Coding Sequence: ATGGCATCGCTACCGGAGATCGACAAGCAACAACACATCAGTGCTGTTAAGGCGGAGCAATATTTACCCGATAAGACATTGTCGGTTTCGCCCGGTGTTGTCGTAAAAGATGAAAATCTTCCTCAAACCGAAAACTCGTCGTTTAACCTTGAATGTGATAATGACAACAGTGACCATATACATGATGACACAAACACCCGGTTGGGGAACGAAGATACCTCACCGAATGAAGGAAAAGAGATTTGCGTAAAACCCGACCCGTCAGGATATGACATCTTTAAAGGAATAACGGATGAACAAAAAGACGCAGCTCGCAAAAACAATGAGTGTTTCATCTGCAAAAAGCGCTTCTCCCGGTTCTCAACGTTCAAAAGACACATGAAGAGACACACGGGTGTGAAAAACTACAAGTGCCACATTTGCGATAAAGCTTTCGCCGAAGGAAGTTACTTGAAAGCTCACTTAATAACTCACAGCGGTGCCACCCCATACGGTTGTAAAATATGTCTGAAACGGTTCACACAGTCTTCTAGCCTGCACAGTCATATGAAAATTCACTTAGGTGAAAAACGGTACAAATGCGAGGTGTGCTTAAAGGCCTTTACTGAATCATCAACCCTGAGGAAGCATATGCTCGTACATAATCCTAATCCTCCGCAATTCCAGTGCGATGAATGTAGTCGCACATTTAATCGTAAAATTAACTTGAACGAACACATGAAAACCCATTATCGCAACAAGGGTGAACCGCTGGACGGAGACGACCTTCACGAGTGTATggtttgcttgaaaattatccGGAATGCGTCGAATTTCAAGAAGCACATGAAGATTCATACAGGCGAAAAAATGTATTCGTGTACACTGTGCGATGCCCGATTCAATCAGTCTAACAGTCTGCGAGCTCATATGTCGAATCACACCGGCCAGAAGGACTTCCAATGCCCTGTTTGTCAGAAGGAATTCAGTCTGTCCTACAACATGAAGAAACACATGCGGATACACAGTGGCGAGAAAAGATTTGTCTGTGAGGTATGCGATCGTGCATTCACCGACTCTTCGACTTTGCGGAAGCATCGTTACACACATACAACGGAAAAGAATTTTCTGTGCGACATTTGCTCCAAGGCATTTTCCCAACAGACCAGCCTTCAATTACACCTTCGAATACATTCAGGAGATAAACCGCACGTCTGCAAAGTCTGTTCGAAGAGTTTTCACGAAAGTTCGTCGCTGTCCAAACACATGAATCTTCATCTACCAGAGAAGCCTTTTCAATGCGAAATTTGTTCGAAGAAATTCTCGCAAAAGTACAGCCTCAAGAAGCATATGCGCACCCACGAAGATAATCGTTCCGTGCAATGCGAATTCTGTCCGAAGACATTTATGGATGCCGCCACTCTGAAAAAACATCAACTAACGCATTTGGTGGGCAAAGAGTATTCCTGcgacatttgtccgaaaaagtTTACCACCCAGGGCGGTTTGAAGACGCATTTAACGATCCACAATGGTGAAAAGAAGTACCAGTGCCAGGACTGTTTAAAGAAATTCACATTAGCCGGCAACTTAAAGACTCATATTGCCAAAATGCATTCAACCGATCGACCGAGATACGAATGTGAAAATTGTCCAAAGGTCTTCGTCAGTCAGGACAAGCTGGAAGTACATCAACAGTCAATGCATTGCGGcgaaaagaaattatttccatgCGAAATTTGCCACAAAACGTTCACACTCATGGGCAATATGAAGAAGCACTTGAAATTGCATGATATTGAAATATTGGAAACGTTGGAGATCAAGCCGGAAATACAGGACGATGGAGTGGATGAGTTGTCAGCGAATTTGTCGGCGAATATAATGAACATTACGCAAGTGATTAACATCATACCATCAACGCTGTACCAGCAGTTGGATTTGAATAATGTCCAATTTTTACGATGA
Protein Sequence: MASLPEIDKQQHISAVKAEQYLPDKTLSVSPGVVVKDENLPQTENSSFNLECDNDNSDHIHDDTNTRLGNEDTSPNEGKEICVKPDPSGYDIFKGITDEQKDAARKNNECFICKKRFSRFSTFKRHMKRHTGVKNYKCHICDKAFAEGSYLKAHLITHSGATPYGCKICLKRFTQSSSLHSHMKIHLGEKRYKCEVCLKAFTESSTLRKHMLVHNPNPPQFQCDECSRTFNRKINLNEHMKTHYRNKGEPLDGDDLHECMVCLKIIRNASNFKKHMKIHTGEKMYSCTLCDARFNQSNSLRAHMSNHTGQKDFQCPVCQKEFSLSYNMKKHMRIHSGEKRFVCEVCDRAFTDSSTLRKHRYTHTTEKNFLCDICSKAFSQQTSLQLHLRIHSGDKPHVCKVCSKSFHESSSLSKHMNLHLPEKPFQCEICSKKFSQKYSLKKHMRTHEDNRSVQCEFCPKTFMDAATLKKHQLTHLVGKEYSCDICPKKFTTQGGLKTHLTIHNGEKKYQCQDCLKKFTLAGNLKTHIAKMHSTDRPRYECENCPKVFVSQDKLEVHQQSMHCGEKKLFPCEICHKTFTLMGNMKKHLKLHDIEILETLEIKPEIQDDGVDELSANLSANIMNITQVINIIPSTLYQQLDLNNVQFLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00246518;
90% Identity: iTF_00246518;
80% Identity: iTF_00246518;