Basic Information

Insect: Bradysia odoriphaga
Gene Symbol: -
Assembly: GCA_016920775.1
Location: JAFDOW010000343.1:840242-845570[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.9e-05 0.00097 19.3 5.2 2 23 109 130 109 130 0.97

2 17 2.1e-06 0.00011 22.3 0.5 1 23 136 158 136 158 0.99

3 17 2e-05 0.001 19.3 2.9 3 23 166 186 164 186 0.98

4 17 1.2e-06 6.1e-05 23.1 0.6 1 23 192 214 192 214 0.99

5 17 1.7e-07 8.6e-06 25.8 1.8 1 23 221 243 221 243 0.99

6 17 0.00045 0.023 15.0 1.6 1 23 257 279 257 279 0.97

7 17 1.4e-05 0.00071 19.7 0.7 1 23 285 307 285 307 0.98

8 17 2.8e-07 1.4e-05 25.1 1.3 1 23 313 335 313 335 0.99

9 17 4.2e-07 2.1e-05 24.5 1.0 1 23 341 363 341 363 0.98

10 17 2e-06 0.0001 22.4 0.5 1 23 369 391 369 391 0.95

11 17 0.0001 0.0051 17.0 4.6 1 23 397 419 397 419 0.97

12 17 1.7e-08 8.8e-07 28.9 4.0 1 23 425 447 425 447 0.99

13 17 6.1e-06 0.00031 20.9 0.4 2 23 454 475 453 475 0.98

14 17 1.2e-06 5.9e-05 23.2 0.4 1 23 481 503 481 503 0.98

15 17 2.1e-05 0.0011 19.2 0.5 1 23 509 532 509 532 0.97

16 17 1.6e-06 8.2e-05 22.7 0.2 1 23 539 562 539 562 0.97

17 17 4.9e-05 0.0025 18.0 2.2 1 23 569 591 569 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.9e-05	0.00097	19.3	5.2	2	23	109	130	109	130	0.97
2	17	2.1e-06	0.00011	22.3	0.5	1	23	136	158	136	158	0.99
3	17	2e-05	0.001	19.3	2.9	3	23	166	186	164	186	0.98
4	17	1.2e-06	6.1e-05	23.1	0.6	1	23	192	214	192	214	0.99
5	17	1.7e-07	8.6e-06	25.8	1.8	1	23	221	243	221	243	0.99
6	17	0.00045	0.023	15.0	1.6	1	23	257	279	257	279	0.97
7	17	1.4e-05	0.00071	19.7	0.7	1	23	285	307	285	307	0.98
8	17	2.8e-07	1.4e-05	25.1	1.3	1	23	313	335	313	335	0.99
9	17	4.2e-07	2.1e-05	24.5	1.0	1	23	341	363	341	363	0.98
10	17	2e-06	0.0001	22.4	0.5	1	23	369	391	369	391	0.95
11	17	0.0001	0.0051	17.0	4.6	1	23	397	419	397	419	0.97
12	17	1.7e-08	8.8e-07	28.9	4.0	1	23	425	447	425	447	0.99
13	17	6.1e-06	0.00031	20.9	0.4	2	23	454	475	453	475	0.98
14	17	1.2e-06	5.9e-05	23.2	0.4	1	23	481	503	481	503	0.98
15	17	2.1e-05	0.0011	19.2	0.5	1	23	509	532	509	532	0.97
16	17	1.6e-06	8.2e-05	22.7	0.2	1	23	539	562	539	562	0.97
17	17	4.9e-05	0.0025	18.0	2.2	1	23	569	591	569	591	0.97

Sequence Information

Coding Sequence: ATGGCATCGCTACCGGAGATCGACAAGCAACAACACATCAGTGCTGTTAAGGCGGAGCAATATTTACCCGATAAGACATTGTCGGTTTCGCCCGGTGTTGTCGTAAAAGATGAAAATCTTCCTCAAACCGAAAACTCGTCGTTTAACCTTGAATGTGATAATGACAACAGTGACCATATACATGATGACACAAACACCCGGTTGGGGAACGAAGATACCTCACCGAATGAAGGAAAAGAGATTTGCGTAAAACCCGACCCGTCAGGATATGACATCTTTAAAGGAATAACGGATGAACAAAAAGACGCAGCTCGCAAAAACAATGAGTGTTTCATCTGCAAAAAGCGCTTCTCCCGGTTCTCAACGTTCAAAAGACACATGAAGAGACACACGGGTGTGAAAAACTACAAGTGCCACATTTGCGATAAAGCTTTCGCCGAAGGAAGTTACTTGAAAGCTCACTTAATAACTCACAGCGGTGCCACCCCATACGGTTGTAAAATATGTCTGAAACGGTTCACACAGTCTTCTAGCCTGCACAGTCATATGAAAATTCACTTAGGTGAAAAACGGTACAAATGCGAGGTGTGCTTAAAGGCCTTTACTGAATCATCAACCCTGAGGAAGCATATGCTCGTACATAATCCTAATCCTCCGCAATTCCAGTGCGATGAATGTAGTCGCACATTTAATCGTAAAATTAACTTGAACGAACACATGAAAACCCATTATCGCAACAAGGGTGAACCGCTGGACGGAGACGACCTTCACGAGTGTATggtttgcttgaaaattatccGGAATGCGTCGAATTTCAAGAAGCACATGAAGATTCATACAGGCGAAAAAATGTATTCGTGTACACTGTGCGATGCCCGATTCAATCAGTCTAACAGTCTGCGAGCTCATATGTCGAATCACACCGGCCAGAAGGACTTCCAATGCCCTGTTTGTCAGAAGGAATTCAGTCTGTCCTACAACATGAAGAAACACATGCGGATACACAGTGGCGAGAAAAGATTTGTCTGTGAGGTATGCGATCGTGCATTCACCGACTCTTCGACTTTGCGGAAGCATCGTTACACACATACAACGGAAAAGAATTTTCTGTGCGACATTTGCTCCAAGGCATTTTCCCAACAGACCAGCCTTCAATTACACCTTCGAATACATTCAGGAGATAAACCGCACGTCTGCAAAGTCTGTTCGAAGAGTTTTCACGAAAGTTCGTCGCTGTCCAAACACATGAATCTTCATCTACCAGAGAAGCCTTTTCAATGCGAAATTTGTTCGAAGAAATTCTCGCAAAAGTACAGCCTCAAGAAGCATATGCGCACCCACGAAGATAATCGTTCCGTGCAATGCGAATTCTGTCCGAAGACATTTATGGATGCCGCCACTCTGAAAAAACATCAACTAACGCATTTGGTGGGCAAAGAGTATTCCTGcgacatttgtccgaaaaagtTTACCACCCAGGGCGGTTTGAAGACGCATTTAACGATCCACAATGGTGAAAAGAAGTACCAGTGCCAGGACTGTTTAAAGAAATTCACATTAGCCGGCAACTTAAAGACTCATATTGCCAAAATGCATTCAACCGATCGACCGAGATACGAATGTGAAAATTGTCCAAAGGTCTTCGTCAGTCAGGACAAGCTGGAAGTACATCAACAGTCAATGCATTGCGGcgaaaagaaattatttccatgCGAAATTTGCCACAAAACGTTCACACTCATGGGCAATATGAAGAAGCACTTGAAATTGCATGATATTGAAATATTGGAAACGTTGGAGATCAAGCCGGAAATACAGGACGATGGAGTGGATGAGTTGTCAGCGAATTTGTCGGCGAATATAATGAACATTACGCAAGTGATTAACATCATACCATCAACGCTGTACCAGCAGTTGGATTTGAATAATGTCCAATTTTTACGATGA
Protein Sequence: MASLPEIDKQQHISAVKAEQYLPDKTLSVSPGVVVKDENLPQTENSSFNLECDNDNSDHIHDDTNTRLGNEDTSPNEGKEICVKPDPSGYDIFKGITDEQKDAARKNNECFICKKRFSRFSTFKRHMKRHTGVKNYKCHICDKAFAEGSYLKAHLITHSGATPYGCKICLKRFTQSSSLHSHMKIHLGEKRYKCEVCLKAFTESSTLRKHMLVHNPNPPQFQCDECSRTFNRKINLNEHMKTHYRNKGEPLDGDDLHECMVCLKIIRNASNFKKHMKIHTGEKMYSCTLCDARFNQSNSLRAHMSNHTGQKDFQCPVCQKEFSLSYNMKKHMRIHSGEKRFVCEVCDRAFTDSSTLRKHRYTHTTEKNFLCDICSKAFSQQTSLQLHLRIHSGDKPHVCKVCSKSFHESSSLSKHMNLHLPEKPFQCEICSKKFSQKYSLKKHMRTHEDNRSVQCEFCPKTFMDAATLKKHQLTHLVGKEYSCDICPKKFTTQGGLKTHLTIHNGEKKYQCQDCLKKFTLAGNLKTHIAKMHSTDRPRYECENCPKVFVSQDKLEVHQQSMHCGEKKLFPCEICHKTFTLMGNMKKHLKLHDIEILETLEIKPEIQDDGVDELSANLSANIMNITQVINIIPSTLYQQLDLNNVQFLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00245618; iTF_00246004; iTF_00246847;
90% Identity: iTF_00245618; iTF_00246004; iTF_00246847;
80% Identity: iTF_00246847;