Bodo001441.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- -
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000643.1:246076-249556[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2 7.2e+03 -2.9 0.2 26 49 54 77 43 82 0.71 2 11 1.5 4.9e+03 -2.4 0.1 26 49 81 104 64 106 0.74 3 11 0.27 8.6e+02 0.0 0.0 22 44 118 140 112 148 0.87 4 11 0.23 7.2e+02 0.3 0.1 26 51 150 175 137 178 0.81 5 11 0.71 2.3e+03 -1.3 0.0 27 44 179 196 177 201 0.84 6 11 0.0014 4.4 7.3 0.0 22 44 202 224 194 225 0.89 7 11 8.2e-07 0.0026 17.7 0.2 12 43 221 252 215 260 0.87 8 11 0.18 5.8e+02 0.5 0.0 18 45 254 282 253 285 0.78 9 11 0.00043 1.4 9.0 0.0 21 45 286 310 272 315 0.86 10 11 0.045 1.4e+02 2.5 0.1 23 46 345 368 341 375 0.82 11 11 0.013 42 4.2 0.1 23 50 403 430 391 432 0.87
Sequence Information
- Coding Sequence
- ATGGCTAGCAaatcaaaaaatccaacaaaaggATTAGGACGGAACATTATCAAGGACAATGGTGTAGGGACTGCAGACGGTATGGTCGGTGGtgttcacaaaaaaaacgttAAGAAGGCTAAGTTACGTCCTAAAGCAAAGGATACCGATGGTTCCATTAGATGCGTCGTCTGCTTAGAACAATTCAAACGCAAAAGTCACTTCCAGAAGCATATGAGAGACGAACACTACAAATCGTTTGAGTGCGACATCTGTCATGGCACATTTTCCACCCTTTCGAAGATAGAATCCCACTTGATGAAAATGCATATTGCaggaaattttataaaaaaggaaattccagaTTCAAATGACAAACCGTTTATGTGTCATCAATGTCctgcatcgtttaaaatttCCAGTAAATTGAAAGGGCACATGCTAAGTCATAGTAACGATCGAGCGTTTGAATGCGAAATGTGCGATCGAAGCTTTAAACACCGAGAAAGCTTAAATAATCACATCCAAATTAATCACATGGGCAAACGTTTCATGTGTGAAATTTGTAACGCGGAGTTCACGTCAAAGTCAAATCTTGTGACCCACACGAGAATGCATAATGGCGATCGACCGTTTAGCTGCGAAATTTGTTTTGCTAACTTTGCCAAGAAAAGTAATTTAACGGTACATTTACGATCACACAACGATAGTGAGAGACCGTATGTATGTGACATCTGTGCGGCTGCGTTTAAAAATTCGTCCCACTTAACGCGTCACAAGAGAACACACAGTGAAGATCGACCTTACAAATGTACTGATTGCTTTGCTGGTTTCAAATCCCCGGATCTTCTTAAAAATCACATGAGCATCCATTCCGACGAGCGTTCATTCAAATGCGAGCTATGTTCCGCAACttttaaacagaaaaagaaTTTGAACAGCCATTTGAAAACACACTCCAAGAAGGAGAGATCTTTCCAATGCAATATGTGTACGGATGCGTTCACTTCCCAGCTTGCTCTGACTAAACATATGCTCGTACATACTACCTGTCGACCTTTCGAATGCGAAATTTGTTTGGCTAGTTTTAAAGAAGCTGGTGCAAGAATGCGTCACATGAAGATACATTTAGACGACCGAAAAATGTACGAGTGCGAAATTTGCTCTAAGAAATTCATGCATTTGTATTCGCTAAAATCTCACGAGCAACTGCTTCATCTAAAAGACAATCCGTACGAATGCAGCAAATGTAAGAAAAAGTTTGGGAATGGAAAAGCCTTACGCAGGCACCTTAAACGAATTCACAATGCTACTGAGTTGAAGGTAGCTGAACGATCTGCTGATGACACACATATCGTGAGCTTGGACAATATTAAACGGGAGCCCAAACTTTTAagttag
- Protein Sequence
- MASKSKNPTKGLGRNIIKDNGVGTADGMVGGVHKKNVKKAKLRPKAKDTDGSIRCVVCLEQFKRKSHFQKHMRDEHYKSFECDICHGTFSTLSKIESHLMKMHIAGNFIKKEIPDSNDKPFMCHQCPASFKISSKLKGHMLSHSNDRAFECEMCDRSFKHRESLNNHIQINHMGKRFMCEICNAEFTSKSNLVTHTRMHNGDRPFSCEICFANFAKKSNLTVHLRSHNDSERPYVCDICAAAFKNSSHLTRHKRTHSEDRPYKCTDCFAGFKSPDLLKNHMSIHSDERSFKCELCSATFKQKKNLNSHLKTHSKKERSFQCNMCTDAFTSQLALTKHMLVHTTCRPFECEICLASFKEAGARMRHMKIHLDDRKMYECEICSKKFMHLYSLKSHEQLLHLKDNPYECSKCKKKFGNGKALRRHLKRIHNATELKVAERSADDTHIVSLDNIKREPKLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245638;
- 90% Identity
- iTF_00246539;
- 80% Identity
- iTF_00246539;