Bcop000791.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:3621058-3629146[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.032 57 3.8 0.0 23 46 36 59 30 64 0.88 2 10 0.099 1.8e+02 2.2 0.0 23 44 64 85 60 93 0.83 3 10 0.00071 1.3 9.1 0.0 26 46 132 152 127 157 0.90 4 10 0.0063 11 6.0 0.1 22 44 156 178 153 185 0.87 5 10 0.028 51 4.0 0.0 26 46 188 208 179 216 0.87 6 10 0.39 7.1e+02 0.3 0.1 22 43 212 233 207 241 0.86 7 10 0.018 32 4.6 0.2 14 53 232 271 220 272 0.85 8 10 0.014 25 5.0 0.0 22 51 268 297 263 299 0.86 9 10 0.041 73 3.4 0.0 22 44 296 318 293 323 0.91 10 10 0.1 1.8e+02 2.2 0.0 27 47 445 465 437 468 0.91
Sequence Information
- Coding Sequence
- ATGAAGCGACACACGGGTGTGAAAAACTACAAGTGCCACATTTGTCATAAAGCTTTCGCCGAAGGAAGTTATTTGAAGGCCCACTTAATCACTCACAGCGGTGCTACACCATACGGTTGTAAAATATGTCTGAAACGGTTCACACAGTCTTCGAGCTTGCACAGCCATATGAAAATTCACACAGGTGAAAAACGGTACAAATGCGAGGTGTGTGCTAAGGCCTTTACGGAATCATCAACCCTGCGGAAGCATATGCTCGTACACAATCCCAATCCTCCGCAATTCCAGTGCGATGAATGTAGTCGCACATTCAATCGTAAAATTAACTTGAACGAACACATGAAGACCCATTATCGCAACAAGGGTGAACCGCTGGACGGAGACGACCTTCACGAGTGTATGGTTTGCTTGAAAGTCATCCGCAATGCGTCGAATTTCAAGAAGCACATGAAGATTCATACAGGCGAAAAAATGTACTCCTGTACCCTGTGCGATGCTAGATTCAATCAGTCCAATAGTCTGCGAGCACACATGTCGAATCACACGGGCCAGAAGGACTTTCAATGTCCCGTTTGTCAGAAGGAATTCAGTCTGTCCTATAACATGAAGAAACACATGCGGATACACAGTGGCGAGAAAAGATTTGTCTGTGAGGTATGCGAACGTGCCTTCACCGACTCTTCGACTCTGCGGAAGCATCGTTACACACATACAACGGAAAAGAATTTTCTGTGCGACATTTGCTCCAAGGCATTTTCCCAACAGACCAGCCTTCAATTACATCTTCGAATTCATTCAGGCGATAAACCGCACGTCTGCAAAGTGTGTTCGAAGAGTTTTCACGAAAGTTCGTCGTTGTCCAAACACATGAATCTTCATCTACCGGAGAAGCCTTTTCAATGCGAAATTTGTTCGAAGAAATTCTCGCAAAAGTACAGCCTTAAGAAGCACATGCGCACCCACGAAGATAATCGTTCCGTGCAATGCGAATTCTGTCCGAAGACATTTATGGATGCGGCCACACTGAAAAAACATCAGCTGACGCATTTGGTCGGCAAAGAGTATTCCTGCGACATTTGTCCGAAAAAGTTTACCACCCAGAGCGGTCTGAAGACGCACTTAACGATCCACAATGGTGAAAAGAAGTACCAGTGCCAGGACTGTTTGAAGAAATTCACATTAGCCGGCAACTTAAAGACTCATATCGCCAAAATGCATTCGACCGATCGACCGCGATACGAATGCgaaaattgtccgaaatatTTCGTCAGCCAGGAGAAACTGGATGTCCATCAACAGTCAATGCATTGCGgcgaaaagaaattatttccctGCGAGATTTGCCACAAAACGTTCACGCTGATGGGCAATTTGAAGAAGCACATGAAATTGCATGATATTGAAATATTGGAGACGTTGGAGATCAAGCCGGAAATACAGGACGATGGAGCTGAGGAATTGGCAGCGAATTTGTCGGCGAATATAATGAACATTACGCAAGTGATTAACATCATACCTTCGACGCTGTATCAACAATTGGATTTGAATAATGTCCAATTTTTACGATGA
- Protein Sequence
- MKRHTGVKNYKCHICHKAFAEGSYLKAHLITHSGATPYGCKICLKRFTQSSSLHSHMKIHTGEKRYKCEVCAKAFTESSTLRKHMLVHNPNPPQFQCDECSRTFNRKINLNEHMKTHYRNKGEPLDGDDLHECMVCLKVIRNASNFKKHMKIHTGEKMYSCTLCDARFNQSNSLRAHMSNHTGQKDFQCPVCQKEFSLSYNMKKHMRIHSGEKRFVCEVCERAFTDSSTLRKHRYTHTTEKNFLCDICSKAFSQQTSLQLHLRIHSGDKPHVCKVCSKSFHESSSLSKHMNLHLPEKPFQCEICSKKFSQKYSLKKHMRTHEDNRSVQCEFCPKTFMDAATLKKHQLTHLVGKEYSCDICPKKFTTQSGLKTHLTIHNGEKKYQCQDCLKKFTLAGNLKTHIAKMHSTDRPRYECENCPKYFVSQEKLDVHQQSMHCGEKKLFPCEICHKTFTLMGNLKKHMKLHDIEILETLEIKPEIQDDGAEELAANLSANIMNITQVINIIPSTLYQQLDLNNVQFLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246518;
- 90% Identity
- iTF_00246518;
- 80% Identity
- iTF_00245618;