Bodo013732.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- MBD2
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010001689.1:292942-294964[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-20 1.7e-16 59.4 0.0 5 74 8 72 5 75 0.92 2 2 0.00069 2.2 7.8 0.0 29 62 125 158 92 180 0.79
Sequence Information
- Coding Sequence
- atgaacGTAACCATCGAGCGTAAAAGTGAGTGTGCTGCATTGCCGAAAGGCTGGCAACGAGAGGAGATAATGCGAAAGTCGGGCTTATCAGCAGGGAAAGTAGACGTCTTCTATTACAGTCCGCTGGGTAGTAAAGTGGACACCAAATCGAAACTAATTCGTCAATTAGGCGACACTGTCGATCTGTCATCGTTTGATTTTCAAACCGGACGTAATATACCAAATGCTCAACAATCGCTGCTCcatcagcagcagcaacaacagcaaccACAGGCCATTCGCTCCACAAACATGCAACGATCCATCATTGAAATGCTACCTTCGTCGGTGCCACCGAATAAGAACCCATTGAGCATTGAGTACAGCCGCGGCATGCGAACGGACGTGTCTCTCGTTCCACCAATCAGACAAACAGCGTCAATATTTAAACAGCCCGTCACAGTGTACAAAACGCAGGACAGCAAATCCAAAGCAGACTTAAAACACGGCACACTGGACAAACCAAATCAATTATTCTGGGCAAAACGACTGGAGGGCCTTCGAGCTTGTGACGTTGACGGCGTTGAATTGGGTCCAGTCGAGCTGCCAAAGGGATTGAAACCGGTCGGACCGAATGTTGATGAAGGCACACTGTTACAGTCCGTTGCAACGTCGTTGCATGTCACTTCACAAGCTGTAACCGGCCAACAGGCATCCAAAGCTGTGCTACAAATGAATCCGGGCGTATTTTTGAATCCCGACCAACCGCTCATGCATTCGGTGAATATAAACGAAGACGATATACGGCGTCAGGAGGATCGGGTACAGGTGGCGCGACGGAAATTACAAGAGGCGTTGAAGTGTTAG
- Protein Sequence
- MNVTIERKSECAALPKGWQREEIMRKSGLSAGKVDVFYYSPLGSKVDTKSKLIRQLGDTVDLSSFDFQTGRNIPNAQQSLLHQQQQQQQPQAIRSTNMQRSIIEMLPSSVPPNKNPLSIEYSRGMRTDVSLVPPIRQTASIFKQPVTVYKTQDSKSKADLKHGTLDKPNQLFWAKRLEGLRACDVDGVELGPVELPKGLKPVGPNVDEGTLLQSVATSLHVTSQAVTGQQASKAVLQMNPGVFLNPDQPLMHSVNINEDDIRRQEDRVQVARRKLQEALKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265771;
- 90% Identity
- iTF_00245404;
- 80% Identity
- -