Bcop013009.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- MBD2
- Assembly
- GCA_014529535.1
- Location
- NW:1787689-1790108[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-20 4.3e-17 61.3 0.0 4 74 7 72 4 75 0.93 2 2 0.00086 2.3 7.7 0.0 29 62 130 163 97 185 0.79
Sequence Information
- Coding Sequence
- atgAACGTTACCATCGAGCGTAAAAGTGATTGTGCTGCATTGCCGAAAGGCTGGCAACGAGAGGagataatgcgaaagtcgggCTTATCAGCAGGGAAAGTAGACGTCTTCTATTACAGTCCGCTGGGTAGTAAAGTGGACACCAAATCGAAATTGATTCGTCAATTGGGCGACACTGTAGATCTGTCGTCGTTTGATTTTCAAACCGGACGCAATATACCAAATGCTCAACAATCCCTGTTCCATcagcaacagcagcagcagcagcaacaacaacagcaaccgCAGGCCATTCGCTCGACAAACATGCAACGATCAATCATTGAAATGTTACCGTCATCGGTGCCACCGAATAAGCACCCGTTGAGCATTGAGTACAGCCGCGGCATGCGAACGGACGTGTCACTCGTTCCACCAATCAGACAAACAGCTTCAATATTCAAACAGCCCGTCACAGTTTACAAAACGCAGGACAGCAAATCCAAAGCAGACTTAAAACACGGCACACTGGACAAACCAAATCAATTATTCTGGGCAAAGCGACTGGAGGGCCTTCGAGCTTGTGACGTTGACGGCGTTGAATTGGGTCCAGTCGAGCTGCCAAAGGGACTGAAACCGGTCGGACCGAATGTTGATGACGGCACACTACTCCAGTCCGTTGCAACGTCGTTGCATGTCACTTCACAGGCCGTGACCGGTCAACAGGCATCCAAAGCTGTGCTGCAAATGAATCCGGGCGTATTTTTGAATCCCGATCAACCGCTCATGCATTCGGTGAATATAAACGAAGACGATATACGGCGTCAGGAGGATCGAGTACAGGTGGCACGACGGAAATTACAAGAGGCGTTGAAGTGTTAG
- Protein Sequence
- MNVTIERKSDCAALPKGWQREEIMRKSGLSAGKVDVFYYSPLGSKVDTKSKLIRQLGDTVDLSSFDFQTGRNIPNAQQSLFHQQQQQQQQQQQQPQAIRSTNMQRSIIEMLPSSVPPNKHPLSIEYSRGMRTDVSLVPPIRQTASIFKQPVTVYKTQDSKSKADLKHGTLDKPNQLFWAKRLEGLRACDVDGVELGPVELPKGLKPVGPNVDDGTLLQSVATSLHVTSQAVTGQQASKAVLQMNPGVFLNPDQPLMHSVNINEDDIRRQEDRVQVARRKLQEALKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265771;
- 90% Identity
- iTF_00246326;
- 80% Identity
- -