Bodo015530.1
Basic Information
- Insect
- Bradysia odoriphaga
- Gene Symbol
- RFX7
- Assembly
- GCA_016920775.1
- Location
- JAFDOW010000525.1:169854-177359[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-19 2e-15 57.0 0.1 34 78 18 62 13 63 0.91 2 3 0.94 7.5e+03 -2.5 0.0 5 25 331 351 328 353 0.84 3 3 1.4 1.1e+04 -3.1 0.0 14 39 622 647 616 651 0.59
Sequence Information
- Coding Sequence
- ATGTGTCCATTCCGAAGCAGGACGTGTACGACGATTATTTcgAATACTGCAACAAGGTCGACATTCAAGCCACTTTCAACTGCCGATTTCGGCAAAGTTATGAAACAGGTCTTTCCATCGATTCGTCCGCGACGTTTGGGTACCCGTGGCAATTCACGGTATTGTTATGCAGCACTTCGCAAAACGACGCAATTAGCACCGCCATCACTGCCGGAGTTGAAAGCGCATGCAGAGGTTGTCAATGATGCCGACGACGACGAAACTACAGTTTCGAAGTTCGTCAAAAATACAATCAAGGTATGGGCATCAAATTTGTTGAGCTCGAAGTTCGAACGATTGGACGATTTGGCTAGTTACATCACAACGAACAACATGAATTCATTAAGTGCCAAGGTGTTGCAACGAAAAATTACCAGAGATGCTAAATTGTCGCACAAGAAGAATGAATCGTTGACGTCAAAGCGACGGCGACGAAAGCGCAGAATTACCTCACAGTCACAGGCCGCAGAGACTGCTGCATCGACGACGACCAGTGGCAATTCGGAAATTGTTGAAAAGTTTGCGAAGAAAAACGCACCAATCGAACCGATTTTATTGGGCAGCATAAAAACCGAGATCGACATAGACAGTGGCGAATTTGGTACAAAAACCACGTTAAATGAAACCAAAGTGTATTGTGATAAGAATTTTGATACGGACACACCGCAATATCCTTCTACTATAGTAAGTAATATCCAAAAAGAACCAGTCAAAAATGTGATCATGGCTGCGCAAGATACGTCAATGAAACCGCCATTCGATCGTTCGCGCATGCCATTGGATGGGATGGTAAATGGAGCCGCACCGATCGATTCGAATTTATCGTTGAAACGGTTGTTAAACACGAGTACAAATCCACCGACGaggccaaattttgtttttagagAACCGAACAACGTTGAAACATCccaacagcaacaacagcagcagcaacaacaaccacaGCAGCAAGTACAACAATTACCTGAAAATGCCGATGAGTCATCTGATTTGATAATTCCGCGTGAGAGAGTGATCAGCATTTGTACGTTGGATAAAGATGCGCTGGATAGCTATCTGATTGAAGGCGAAAATTCACAGGACCAAGAAGCCGAATTAATGGAATACTTTCAGTCCGAGGAGGCGAATAATGTACCAACAGCAGGTAAGAAACAGACAACACCAATTTTGGAGAATTATCAACTTTACAACAATGACCTCAAAGTAAATCGTAAAATTTCGTTCGACGATAACAACAAGCAGATATTTGAGCTGCGGTCATATCTGCAAcaaaattttgactcgacgaaAAATCTTGCGAAAAAGAAACCTGGTAACCCATTGAACACTCATCTTAAGTATACAACCGCCCCGACGACTGTGCAACGTAATGCTAAGTCTAAACGGGGTTCTAAGTCTTCTACCAAGTCTCAAAGTTTCGTTCAATCAAACTTTGTGCAGAATGCCAATGCTCGCTGTCAGAAGTACAGTTTCGTTCCAATATCACCAGGCCCACAGTCACCTGTCCAGTCGCGTGCATTCAATTTTAACAATAACAACACAATCACGTCAAGTCCTTTTGTAAGTCCCGGTATAACACCGAAACCGCGTCAGCTACAAAATTACTCGTACACACCCAGCCATTCGGTCGATCAATTTGAATTGAACGGCACCTTCTCCAAACCATTTCaattaaaagaagaaataaGTGCCTCAGCACCAACTAGTCCTCAGTCACTCAAAGCTAATGCATTTCAGTTCTTTCCGGAAAAGAACCAGTTCTTCGGTAACGATCGCTTCTCCATGGCATATCAAAGTAATGCCACGGTGTCGGCATCGTTATGTGAAAATCGGTCTCAGAGCGTTCCCGTTGACAGGCTATTTCCGCAGAAATACAATCATTACTCGTCGACGAGCCAAACGCCCATTCCGCCTGACTACATTGACTTTGGCAATCATGACCACTATTTCGGAACTGTTTCCAATCATCTGATAGACAATAAAAACATTAAGCCGCTTCGGTTCAATGCCCCCAATCATGTTAACGAGCTAGCCGGTGACCTCAATTTCCAATTCAAACATCACATTAATCCAACATCACGATCCGTGCCATCCACACCACAGCCATGCCATCAAAGATATCAATATCGTGACGTTGAAATTTCATCATTCAAGCCGTTCGATATGTCTAAATCGGTGCCAACAACACCGATCACAACGTGTCCGTTCCGGTACAGCCCCGAACTGAATCGCGACTTTTTGATCAATGGCAATACGGTGGATTTAGACTCTCTGGGACCATTGTACAAAGACACATCGAATAGTGGTCTGTGTGACGACGGTCTGGCCATTTCCGATGAAATCGAAGAACTGTCTTCATTTGATAACGTTGCCGATCCAATCATTGGATCCGATCTGCTGAGCAACATTTGA
- Protein Sequence
- MCPFRSRTCTTIISNTATRSTFKPLSTADFGKVMKQVFPSIRPRRLGTRGNSRYCYAALRKTTQLAPPSLPELKAHAEVVNDADDDETTVSKFVKNTIKVWASNLLSSKFERLDDLASYITTNNMNSLSAKVLQRKITRDAKLSHKKNESLTSKRRRRKRRITSQSQAAETAASTTTSGNSEIVEKFAKKNAPIEPILLGSIKTEIDIDSGEFGTKTTLNETKVYCDKNFDTDTPQYPSTIVSNIQKEPVKNVIMAAQDTSMKPPFDRSRMPLDGMVNGAAPIDSNLSLKRLLNTSTNPPTRPNFVFREPNNVETSQQQQQQQQQQPQQQVQQLPENADESSDLIIPRERVISICTLDKDALDSYLIEGENSQDQEAELMEYFQSEEANNVPTAGKKQTTPILENYQLYNNDLKVNRKISFDDNNKQIFELRSYLQQNFDSTKNLAKKKPGNPLNTHLKYTTAPTTVQRNAKSKRGSKSSTKSQSFVQSNFVQNANARCQKYSFVPISPGPQSPVQSRAFNFNNNNTITSSPFVSPGITPKPRQLQNYSYTPSHSVDQFELNGTFSKPFQLKEEISASAPTSPQSLKANAFQFFPEKNQFFGNDRFSMAYQSNATVSASLCENRSQSVPVDRLFPQKYNHYSSTSQTPIPPDYIDFGNHDHYFGTVSNHLIDNKNIKPLRFNAPNHVNELAGDLNFQFKHHINPTSRSVPSTPQPCHQRYQYRDVEISSFKPFDMSKSVPTTPITTCPFRYSPELNRDFLINGNTVDLDSLGPLYKDTSNSGLCDDGLAISDEIEELSSFDNVADPIIGSDLLSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245128;
- 90% Identity
- iTF_00245128;
- 80% Identity
- -