Bcop014703.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- rfx7.L
- Assembly
- GCA_014529535.1
- Location
- NW:5258242-5265383[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-32 1.8e-28 98.8 0.0 3 78 112 187 110 188 0.97 2 3 1.6 1.3e+04 -3.3 0.0 5 25 456 476 453 477 0.83 3 3 1.9 1.5e+04 -3.5 0.0 15 39 748 772 742 776 0.57
Sequence Information
- Coding Sequence
- ATGTCGACATCGATCCCATACGATTTGTCGACCGAATCGGACTTGagacaattttccaatttctatGCCAGTAATTTTATGGTAACAAACAACGGCTCCGACGAACTGAGCAATGGACATGGACGCAAAGAACAAATGACCGAAATGCAACAGATTGTTGAAGCCTCAATGCCTGATTCGTCGAAGAAGGAAGTGTATCAAATACTGGAAAAAATCGAAGAACTAAAACCAGCCGAAAAACTTTTGCTGTACTTAAGACTACCGACGGGATCGCCGGACACTGATCCTCTCAAACAACCGCAAAATCCGTTGGGCACACGTTTGGAAATCAATCATACCATCAACTGGGTCCGGTCACATTtagaaattgatccgaatgtGTCCATTCCGAAGCAGGACGTGTACGACGATTATTTCGAATACTGCAACAAGGTCGACATCAAGCCACTGTCAACCGCCGATTTCGGCAAAGTTATGAAACAGGTCTTTCCATCGATTCGTCCGCGACGTTTGGGTACCCGTGGCAATTCCCGGTATTGTTATGCAGCACTTCGCAAAACGACACAATTAGCACCACCATCGCTGCCGGAGTTGAAAGCGCACGCAGAGGTTGTACATGATGCCGACGACGGTGAAGCTACGGTTTcgaaattcgttaaaaatacCATCAAGGCATGGGCATCGAATTTGTTGAGCTCGAAATTCGAACGATTGGACGATTTGGCTAGTTACATCACAACGAACAACATGAATTCATTAAGTGCCAAGGTGTTGCAACGAAAAATTACCAGAGATGCTAAATTGTCGCACAAGAAGAATGAATCGTTGGCGTCAAAGCGACGTCGACGAAAGCGCAGAATTACCTCACAGTCACAGGCCGCCGAGACTGCTACATCGACGACGACCAGCGGCAATTCGGAAATTGTGGAAAAGTTTGCGAAGAAAAACGCTCCAATCGAACCAGTTCTGTTGGGCAACATAAAAACCGAGATCGACATAGACAGTGGCGAATTTGGTACAAAAACCACGTTAAATGAAACCAAAGTGTATTGTGATAAGAATTTTGATACGGACACACCGCAATATCCTTCTACGCTAGTAAGTAATATCCAAAAAGAACCAGTCAAAAATGTGATCATGGCTGCGCAAGATACGTCAATGAAACCGCCATTCGATCGTTCGCGCATGCCATTGGATGGGATGGTAAATGGAGCCGCACCGATCGATTCGAATTTATCGTTGAAACGGTTGTTGAACACGAGTACAAATCCACCGACGAggccaaattttgtttttagagaACCGAACAACGTTGAAACAtcccaacaacaacagcagcagcagcagcaacaaccaCAGCAGCAAGTACAACAATTACCTGAAAATGCCGATGAAACATCTGATTTGATAATTCCACGTGAGAGAGTGATCAGCATCTGTACGTTGGACAAAGACGCACTGGATAGCTATCTGATTGAAGGTGAAAATTCGCAGGACCAAGAAGCCGAACTGATGGAATACTTTCAGTCCGAGGAGGCGAATAATGTTCCGACGGCAGGTAAGAAACAGACAACGCCAATTTTGGAGAATTATCAACTTTACAACAATGACCTCAAAGTGAATCGTAAAATTTCGTTCGACGATAACAACAAGCAGATATTTGAGCTGCGGTCATATCtgcagcaaaattttgattcgtCGAAAAATCTTGCGAAAAAGAAACCCGCTAACCCTTTGAACACTCATCTTAAGTATACAACCGCCCCGACGACTGTGCAACGTAATACTAAGTCTAAACGGGGTTCTAAGTCTTCTACCAAGTCCCAAAATTACGTTCAATCAAACTTTGTGCAGAATGCCAATGCTCGCTGTCAAAAGTACAGTTTCGTCCCAATATCACCGGGTCCACAGTCACCTGTCCAGTCGCGTGCAttcaattttaacaataaCAACACAATCACGTCAAGTCCATTTGTCAGTCCCGGTGTAACACCGAAACCGCGTCAGCTGCAAAATTACTCGTACACACCCAGCCATTCGGTCGATCAATTTGAATTGAACGGCACCTTCTCCAAACCATTTCAGCTAAAAGAAGAAATTAGTGCCTCAGCACCAACTAGTCCTCAGTCACTCAAAGCTAACGCATTTCAGTTCTTCCCGGATAAAAACCAGTTCTTCGGTAACGATCGCTTCTCCATGGCATATCAAAGTAATGCCCAGGTGTCTGCATCGTTATGTGAAAATCGGTCTCAGAGCGTTCCCGTTGACAGGCTGTTTCCGCAGAAATACAATCATTACTCGTCGACGAGCCAAACGCCCATTCCGCCAGACTACATTGACTTTGGCAATCATGACCACTATTTCGGAACCGTTTCCAATCATCTGATAgacaataaaaacataaaGCCGCTTCGGCTCAATGCCCCCAACCATGTTAACGAGCTAGCCGGCGACCTCAATTTCCAATTCAAACATCACATTAATCCAACATCACGATCAGTGCCATCCACACCACAGCCATGCCATCAAAGATATCAATATCGTGACgttgaaatttcatcattCAAGCCGTTCGATATGTCTAAATCGGTGCCAACAACACCGATCACAACGTGTCCGTTCCGGTACAGCCCCGAACTGAATCGTGACTTTTTGATCAATGGCAATACGGTGGATTTAGACTCTCTGGGACCATTGTACAAAGACACATCGAACAGCGGTCTGTGTGACGACGGTCTGGCCATTTCCGATGAAATCGAAGAATTGTCTTCATTTGATAACGTTGCCGATCCAATCATTGGATCCGATTTGCTGAGCAACATTTGA
- Protein Sequence
- MSTSIPYDLSTESDLRQFSNFYASNFMVTNNGSDELSNGHGRKEQMTEMQQIVEASMPDSSKKEVYQILEKIEELKPAEKLLLYLRLPTGSPDTDPLKQPQNPLGTRLEINHTINWVRSHLEIDPNVSIPKQDVYDDYFEYCNKVDIKPLSTADFGKVMKQVFPSIRPRRLGTRGNSRYCYAALRKTTQLAPPSLPELKAHAEVVHDADDGEATVSKFVKNTIKAWASNLLSSKFERLDDLASYITTNNMNSLSAKVLQRKITRDAKLSHKKNESLASKRRRRKRRITSQSQAAETATSTTTSGNSEIVEKFAKKNAPIEPVLLGNIKTEIDIDSGEFGTKTTLNETKVYCDKNFDTDTPQYPSTLVSNIQKEPVKNVIMAAQDTSMKPPFDRSRMPLDGMVNGAAPIDSNLSLKRLLNTSTNPPTRPNFVFREPNNVETSQQQQQQQQQQPQQQVQQLPENADETSDLIIPRERVISICTLDKDALDSYLIEGENSQDQEAELMEYFQSEEANNVPTAGKKQTTPILENYQLYNNDLKVNRKISFDDNNKQIFELRSYLQQNFDSSKNLAKKKPANPLNTHLKYTTAPTTVQRNTKSKRGSKSSTKSQNYVQSNFVQNANARCQKYSFVPISPGPQSPVQSRAFNFNNNNTITSSPFVSPGVTPKPRQLQNYSYTPSHSVDQFELNGTFSKPFQLKEEISASAPTSPQSLKANAFQFFPDKNQFFGNDRFSMAYQSNAQVSASLCENRSQSVPVDRLFPQKYNHYSSTSQTPIPPDYIDFGNHDHYFGTVSNHLIDNKNIKPLRLNAPNHVNELAGDLNFQFKHHINPTSRSVPSTPQPCHQRYQYRDVEISSFKPFDMSKSVPTTPITTCPFRYSPELNRDFLINGNTVDLDSLGPLYKDTSNSGLCDDGLAISDEIEELSSFDNVADPIIGSDLLSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246076;
- 90% Identity
- iTF_00246076;
- 80% Identity
- -