Bcop009297.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- hang
- Assembly
- GCA_014529535.1
- Location
- NW:469767-479181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0016 0.068 13.5 1.0 2 23 257 279 257 279 0.95 2 24 1.3 56 4.3 2.9 2 22 362 382 361 382 0.93 3 24 1.1 46 4.6 0.7 3 21 392 410 391 411 0.94 4 24 0.16 6.8 7.2 0.6 3 23 452 473 450 473 0.89 5 24 3.2 1.4e+02 3.1 0.2 2 21 485 504 485 505 0.92 6 24 0.37 16 6.1 0.0 2 23 513 535 512 535 0.87 7 24 0.00045 0.019 15.2 0.9 3 23 585 606 583 606 0.95 8 24 0.0083 0.36 11.2 0.1 1 23 614 637 614 637 0.96 9 24 0.39 17 6.0 0.2 1 23 649 672 649 672 0.95 10 24 0.0014 0.062 13.6 0.5 1 23 675 697 675 697 0.97 11 24 0.031 1.3 9.5 2.5 1 23 703 726 703 726 0.96 12 24 0.0064 0.28 11.6 0.1 2 23 827 848 826 848 0.97 13 24 0.085 3.7 8.1 1.9 2 23 877 899 876 899 0.96 14 24 0.0017 0.073 13.4 0.3 2 23 908 930 907 930 0.95 15 24 0.00042 0.018 15.3 2.5 1 23 970 993 970 993 0.96 16 24 0.00017 0.0073 16.6 0.8 2 23 1031 1052 1030 1052 0.97 17 24 0.018 0.76 10.2 2.2 2 23 1061 1083 1061 1083 0.96 18 24 0.00054 0.023 15.0 1.2 2 23 1091 1112 1090 1112 0.97 19 24 0.0015 0.064 13.6 4.0 2 23 1151 1172 1150 1172 0.96 20 24 0.023 0.98 9.9 0.0 1 23 1207 1229 1207 1229 0.92 21 24 0.0044 0.19 12.1 0.2 2 23 1264 1286 1264 1286 0.91 22 24 0.21 8.9 6.9 0.1 2 23 1311 1332 1310 1332 0.95 23 24 8.2e-06 0.00036 20.7 0.2 3 23 1346 1366 1346 1366 0.99 24 24 0.00015 0.0064 16.7 1.1 1 23 1474 1496 1474 1496 0.98
Sequence Information
- Coding Sequence
- atgactgaaaatcTCATTCGACGAGGTGGATGTCGACTGTGTTTAGCACCAGACTCTGAATGTGTACCAATTTTTGCGACCGCTGCAGCCGACAAAGAGCCcctttcatcaaaaattcagGCTTGTGTCAATATCAAAATCCATCAAGGTGACCGTTTATCGGCGCGCGTATGTCACGCCTGTATCAGCTACTTAAATTCATGGCAAAGTTTCAAAAATCGCTGCTATGCAGCCCAAAAGAAGCAACGCGGCATGTTGGATTTATTTTTAGCGAAAGAACGAGCTAGACTTAAAAATGCCTCCCAACAACAAACCCAACCGCAGACACCATCTGTGGTGGCCGCAAATGCACAACGACAAATGGAACAGTATCGGCAACAGCTGGAACAGCAAAGAATATTAAAAGATGCACTCAGTCAGCCGAGTGGCAGCAGTGCTTACAAAAATGCCCAAAGTAACGCATCAGTGGATGTGAGTTTTATAAAATCAGAGCCTGCCGACGATATACCTAATGAGGCGGAAGTGGAAGACGACGAAGAAATGGATCCATCGCAATTTTTGGCTAGAGAGAATGATGAAGAAGAACCAGCTACTGAAGAAGAAGGCGGTGGACCACCGATTCTAACATCATTGGGCCTAACCCATATCAATCATGTGAATCCGTATAGCTTTCTGAGTACCGAACTGGGCAACGAATACCAATCGGAGACCGACAATTCAGTCAACATGTTCTCACCAACGTTCCGTCGAACTCCCGGCTCGCAGCCATCATGTACAGTATGCAACATGAAATTCTCCAACCGTGCGAACGCACGTCGTCACGAACGGAACATACATGGCATCAAATCGGAATCACTGATGGGGCACACTTCCACACCGCAATCGGTCACGATGCCGATGCATCATCCGGTGATGCGACCTATAATACGACCAATAATGCGACCAATgcagaaaaagaagaaaatcatcCCACCAATTGTGTACGACTACACCAAACCGGAATTGTACCGTGAACTGTTGACGGAatcgaaattgtattttatcaAGAGGCACATTGACTTCTTGGAACAATATCAGAATATGAGGTGTACATGCTGCGATCGCGAATTTCAAACCTACAAAATGTTTATGGTGCATATGCGGAAGCGTTACGACACCCTGTCCAGAAATCTATGCTTTAAATGTCTTAAGCAATTCCAGTCGAAAGCCTTATTTGTggctcatttgaagaaaaagaattgCCTGAATTTGTACAAGGTGTACCTTGCCGATGATACCGTTTCCAAAGAACCATTGCCGCCAATACAGGCACGTGTTGGCACCAAAGAAATTATAGCAAATAAAGTGTACGGCTGCAAGCTATGTTCGAAAACGTTCCGATTGAAGATGGATTTCCGTGGTCACGTTTACGAAGCGCACGGTGATGTACAAAAGAAAGAAACGATGGGACCCGAGTGCGGCTTCTGTAAAAATGTGTTCGACGATCCGAGCGTTCGGCGGCGACATTACAACAACATGGAGTGTATAGTGTTTCTAATTTGTGGTACTTGTGACGAGAAATTCGATAACTTAGCCACGTACATAGAGCACGTATATGCAGAACACCTGAAACCAAATCCAGACGGTTCAGTGCCGCCAATACCGCCCGATTCGATGACCAGTCCAGAAGCATCATTGAGTTTAAACAGTTCCAACGATCAAGATCCCACATCACCGTCCGTACAATATGCTAGTCTGAAGTATCCACAAAATTGCAAGGTGTGTGGCAAGCAGTACAATAACTATTACAACGTGCTGAGGCACATGGAATCGAAGCATCCGTATCAATTGCCAGACACATATCGGTGCGAACCCTGCGATATTGGCTATCCCCGTCAAACTGAGCTTCGCGAGCATATGTATAAAATTCACGGTGTCACGATGCCGAAGATTAAAAGAGAAACGTTCACCTGCCGTATGTGCTTGATGACATTTGACAACAAAGAAGTGTGGATCGAACATCAAGCCGTCAATCATTCGACGTTCTATTGTACGCATTGCGACATGGAAACGGAAAGTAAAGAGGAGCTTGAAGCGCATCTTGACATGCACaccaaacagaaaatgttcaccTGCACAGTCTGCTATCACTCTTTCCACACGGAAAGAGGTCTTGAAACGCACTTGGCGGTCATGCATCAAATGAAAAAGGAAGATATGCCGGAAGCGAATGGCAGCTACGTGGAGGAAGGAATGGATATCGACGGAGAATTTAATATgaacgatgatgatgacgacgacgacgacgaagGAGCATTAGAAATTTCTGCCGATGTACACGTCAATGGCGAGACTGGTGGCGATTTTGAGAATGGAACGTTCGACGAAGACGAAGATGATGAAGGAGCCACTGCTGACAATGATGACACCACCGAAAATGCGTCGAAACggttgaaattgaaagaagAAGTCGTGGAAGAAGAGACCGTAGGTCTAATTTCATGCCCATTGTGCCCCGAAAGGTTTCTCGGAAAGATTGAACTTTCAAATCACATGCGTACCCATGGAGCTGCGGTACCAGCTTCGTTCTATAATAATCCGATGAAAGTGAACCCCATAAAACGTACCGGCCATGTAAGCAATCGCATGAGATGCCGTATCTGCCAGAAGAGAATTCACACCAAAATCGGCTACAAACGACACATGTTGGTGGTGCATCAAGTTCGCGACTGTGTGTTCatcaaatgtaaaatttgtcCAGCCGAATTTAGCAACGACAAAGGTCTGAAAGTACACATGTTCCGCACTCATAAGGTAACCGTGCAACAAATGCAGAATGATCCGTCGCTACGATCGACGCCAAATAAAGAATCGACAGCTGGTTCCATTTTACCAAAGATTTTGCCGAAAATTGCGCCAAAGTTGATGTTCGAATGCGACATTTGTCACACTGTGTACCGAAACCATGAACAACTTACATCGCATCGAAGTGTTGTGCATGGAGCTGCTACGCCACCAGCAGCTGCTCCCAGTGCTGGTAACAACACAAATGAAAACCTGGACGCCGAAGATATTCAAGAACCGACATTGCCTGTACCGGAAGCGTGGTGGCAATGTCGATACTGTGACGAAACGTTTAATGCAAGTAAGAAGCTCACCATACATATGAACAGCCACGAAGAGCACGACAATACGGACAATACCTGCAAAGACTGTGGCAACGTCTATGGAACACGAAAATCCCTCTGGGTACACCGACACAAGAAACATCCACGCATACCCAACCCATCCACATGTGAGCTATGCTCGAAAGTATTCTTCGATAAAACCGAACTATATTACCACTTAAAGACCCACTCCAACGACGATGTTTATTCGGGTCTGCAAGAAATGCATCAAGACCTGGAGAATGATCCGGCCGTAAAACTGGAAAAGGTTCAGCCATCAACGAATTATGGAGATGAAGATTTGAATTGCCATATCTGCGGACAAACTTTCCACGATAAGCGAGTTCTGAGCAAGCATTTGCGATTGCACGAATCGGACAACAATCCGCTGCATTCAATGCTCGATGTGGACGAAGAAAACGGATCCGACTACAGTTATCCCTCGTACCAGGGTCAAATGGTCGATGGTCAATTTGCTTGCGACATGTGCCCAAAAACGTTCCCGCTAATCAATGCGTTAAAAGTGCATCGTGGTTGGCATTTCCGCAGTCCTGATGGTCGACAAGTGACAGATCCAAGTAACATTTGGCAGCCCGATGTACCTCAAAGTAAATTTAAACGAACCAAAGCAGCTAATCCACCAACATGTCCGTACTGTAGTTCAACATTTGCCAGTGGAAACAATTTACGCCGTCACATAGTTGAGGTGCATAAACGTAACGAGGCTAAAATGATGCGTGAAAATGGAACCGTTAGCGAAACAGTGTTTGTCGAAAAAGAATTAGAATGCCAGTCATGTTCAATAACGTTCAGTAATCGACCGGAATGGGTTGACCATAAGATCAGTCATGCTAGGACGATGAAACCATCCACAACATTCGAATGGGGATGTGAAATTTGCGGTAAAGTGTTTACACGGAAAGAACGTCTCTTGGCACACATGGTCACTCATCTGAGTGGCAAAGAGGGCGATGGAAGCGTTCATTCAGCTGATCAAAGTGAAATTGGTGGCGAAAATTCACGCAGTTCCATGTCATCGCAATCTCATTCCCAGCAATCACAAGAATCGTCATCGCTTCATCAACGAATGCAACAGGTACAACATCAACAGCTACTCAAACAACAACATCCTTTAGCCACACATTCTCAAAATATTAAGCCTGAAGAAGTGAGTGAAGACGATGAAGAGGAACAAGAGCAGGAGGACGAAAttgacgaagaagaagaagtggaGGAAGAACAAGTACCAGAAGCACCTGCCGAAGCTGCGGCCTATTCGTGCGATCTGTGTCAAGTATTTTTCCGCACAGCCAAAGAGCTACGGCGTCACGTCACAACTCACATCATAAATGGACCGGAAACATCACAGTCAGCCGATTCCGATCGTAACCAACAAAATACTACCCAACTGGACGGCTTCAAGTGTCGTCTGTGTGGATCGAGTAGCGAATCCCATATGGGAATGATTACGTGCATGGAATCGCACAAAACACCGACGAACCTTCGTTGTGGCCAATGTCAATTATATTTCAATACTGAACAGCAAGTGTTAGACCACGAAACACTGTGCCATCCACAGAGCTTTGAATGA
- Protein Sequence
- MTENLIRRGGCRLCLAPDSECVPIFATAAADKEPLSSKIQACVNIKIHQGDRLSARVCHACISYLNSWQSFKNRCYAAQKKQRGMLDLFLAKERARLKNASQQQTQPQTPSVVAANAQRQMEQYRQQLEQQRILKDALSQPSGSSAYKNAQSNASVDVSFIKSEPADDIPNEAEVEDDEEMDPSQFLARENDEEEPATEEEGGGPPILTSLGLTHINHVNPYSFLSTELGNEYQSETDNSVNMFSPTFRRTPGSQPSCTVCNMKFSNRANARRHERNIHGIKSESLMGHTSTPQSVTMPMHHPVMRPIIRPIMRPMQKKKKIIPPIVYDYTKPELYRELLTESKLYFIKRHIDFLEQYQNMRCTCCDREFQTYKMFMVHMRKRYDTLSRNLCFKCLKQFQSKALFVAHLKKKNCLNLYKVYLADDTVSKEPLPPIQARVGTKEIIANKVYGCKLCSKTFRLKMDFRGHVYEAHGDVQKKETMGPECGFCKNVFDDPSVRRRHYNNMECIVFLICGTCDEKFDNLATYIEHVYAEHLKPNPDGSVPPIPPDSMTSPEASLSLNSSNDQDPTSPSVQYASLKYPQNCKVCGKQYNNYYNVLRHMESKHPYQLPDTYRCEPCDIGYPRQTELREHMYKIHGVTMPKIKRETFTCRMCLMTFDNKEVWIEHQAVNHSTFYCTHCDMETESKEELEAHLDMHTKQKMFTCTVCYHSFHTERGLETHLAVMHQMKKEDMPEANGSYVEEGMDIDGEFNMNDDDDDDDDEGALEISADVHVNGETGGDFENGTFDEDEDDEGATADNDDTTENASKRLKLKEEVVEEETVGLISCPLCPERFLGKIELSNHMRTHGAAVPASFYNNPMKVNPIKRTGHVSNRMRCRICQKRIHTKIGYKRHMLVVHQVRDCVFIKCKICPAEFSNDKGLKVHMFRTHKVTVQQMQNDPSLRSTPNKESTAGSILPKILPKIAPKLMFECDICHTVYRNHEQLTSHRSVVHGAATPPAAAPSAGNNTNENLDAEDIQEPTLPVPEAWWQCRYCDETFNASKKLTIHMNSHEEHDNTDNTCKDCGNVYGTRKSLWVHRHKKHPRIPNPSTCELCSKVFFDKTELYYHLKTHSNDDVYSGLQEMHQDLENDPAVKLEKVQPSTNYGDEDLNCHICGQTFHDKRVLSKHLRLHESDNNPLHSMLDVDEENGSDYSYPSYQGQMVDGQFACDMCPKTFPLINALKVHRGWHFRSPDGRQVTDPSNIWQPDVPQSKFKRTKAANPPTCPYCSSTFASGNNLRRHIVEVHKRNEAKMMRENGTVSETVFVEKELECQSCSITFSNRPEWVDHKISHARTMKPSTTFEWGCEICGKVFTRKERLLAHMVTHLSGKEGDGSVHSADQSEIGGENSRSSMSSQSHSQQSQESSSLHQRMQQVQHQQLLKQQHPLATHSQNIKPEEVSEDDEEEQEQEDEIDEEEEVEEEQVPEAPAEAAAYSCDLCQVFFRTAKELRRHVTTHIINGPETSQSADSDRNQQNTTQLDGFKCRLCGSSSESHMGMITCMESHKTPTNLRCGQCQLYFNTEQQVLDHETLCHPQSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246555; iTF_01266182;
- 90% Identity
- iTF_00246555;
- 80% Identity
- -