Bgla030276.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294053.1:26174934-26182095[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.7 8.4e+03 -2.1 0.0 22 43 73 94 70 96 0.86 2 6 8.7e-06 0.043 14.9 0.1 18 52 96 131 92 133 0.83 3 6 1.1e-06 0.0057 17.7 0.4 17 52 383 419 380 421 0.85 4 6 0.52 2.6e+03 -0.4 0.2 20 43 591 614 582 621 0.75 5 6 1.5 7.7e+03 -2.0 0.0 23 41 678 696 675 699 0.68 6 6 8.9e-05 0.44 11.6 0.1 17 52 699 735 694 737 0.86
Sequence Information
- Coding Sequence
- ATGTGCAAAGATAAAGATAAGTTAAAAGCGCACGAAATAACTCATTCGGAGGAAAGGGCTTACTCCTGCGAGATATGTGGAAAAAGGTTTAAACGAAAACATTCTTTAGTAGAACATCAAAAACACCACACAGgtgtcaaGTACGACTGTGAGATATGCCAAAAGCAATTTTTACGACAAGCTTACCTAAACAAACATATGATGATTCATACGGGAGAAAGACCGTATATGTGCAGCACGTGCGGAAAGTCATTTGTTTCCTCCTCTAATCTGAACGGTCACAAAAAGTCACATTCGGAAGATACGCCATTTGAATGTGACATCTGTCACAGAAAATTTAAACAGCCAAAAAATTTAAGAGAACACCTTCGAGtccacacaggagaaaaaccgtaTTTATGTAACGTGTGCGGAAAATCATTTGCTCACATATCGTACTATACAGTGCACAAGAAAATTCATCTGGGAATATACGCGTATCCGTGCGAGATTTGTGGACAGAAAACTATTTGTAAAAGTGATCTAAGAAAACATATGAAGACACATAAAGttgttttaaaTTTTCGAAAATCTATAATAGAAAACGAGGAAAAGTTAAGAAAAATTGTTGAATTAAAGGTAAATACATTTTCACAAGCTGTAAAAACTGAAGAAAATGTATTTATCAAAGTAGAAAATGATGAAATGTTTCACGAAAGTATTGAGACCatagtgaaaaaaaatgaaaacatttctgATGATGATGTACCACTTGTGAAACTAAAAGTAGAATGCGATTTAAATGAAACACAGACTATAAAAATACCTGCAAAAAaacgaatatttaaaaaagaaaggaTAAAAATGGCATGCAAGACTTGTGGAAAGCTATACAAGAACAATGAGAAATTTAAAGCACATGAAAAAGCTCATTTGGAAAAATATGTCTGTGAAATATGCGGAAAggaatcaaaaaataaaagaactttGGTGGAACATAAAAAAACCCACTTAGatgTACGAAAATACGAATGCGAAGTATGCAGCAAAAAATTTTCGAAGAATTTTCTACTCCAGCAACACAAAGTAATCCACACAGGGGAAAGATCATTCATATGCTCTGTGTGTGGTAAATCCTTTGTCTCAAACTCAAATTTGGCCAGTCATAGAAGATCACATTCAGAAAAAACACCTTTTGAATGTGAGATCTGccacaaaaaattcaaacaagAAAGAAATATGAGAACCCACCTTCGGGTTCATACCGGGGAAAAACCATATTTGTGTAACGTGTGCGGAAAGTCGTTTGCGCATAGTTCCTATTACATAGTGCACAAGAAAATCCATCTGGGCATATATGCGTATTCGTGCGAAATTTGCGGACAAAACACCATTTGCAAGAGCGACCTGAAAAAACATATGAGGACACATAAAGCTGAAATAAACGATTATTTACCAAccaaaatgtgtaaaaaatgcgaaaaactgttgataaaactttacaattttcGTAACTTTGTCAAAGAAAATGATACAAAGTTAAGAGAAATAATTACTTCAAAAGAAAACGCCATTCCCATTATCGATAAAATTGTTGATACTCCTTTGGAAGATATGTCAATAAAAACTGAAGAAAATATAGAAATTAAAGTAGAGAAGAAAGATATAAATCAGGAAAACATTGAAAACTTggtgaaaaaagaagaaatcaTTTCAGATGATGATCTACCTCTGATAAAGATAAAAGTTGAATGTGTTTTAAATGATCAGCCACCCAAGAAAaggcaaaaaagaaaaaaacagaaTTACGAGTGTAAAATATGTGGAAAACTTTGtaggaataataaaatattatctgaCCATGAGTCTACTCATTCTGATAAAAAAGCATTCAGCTGTGATTTATGCAACAAACAATTTAAGAGGAAAGATACTTTAGTGgaccataaaaaatatcatacagatgaacCAAAATTCGAGTGtgatatatgcaaaaaaaaattcttacgaCAATCCTACCTGAAGCAGCACACAGTAATCCACACAGGGGAAAGATCATTTATATGCCCTGTGTGTGGTAAATCCTTTGTCTCAAACTCAAATTTGGCCAGTCATAAAAGATCACATTCAGAAAAAACACCTTTTGAATGCGAAATCTGccacaaaaaattcaaacaacAAGGAAACATGAAAACGCACCTACGGGTTCATACAGGGGAAAAACCATATTTGTGTAACGTGTGCGGAAAGTCGTTTGCGCAAAGTTCCTATTACATAGTGCACAAGAAAATCCATCTTGGGATATATGCGTATTCTTGCGAAATTTGCGGACAAAACACCATTTGCAAGAGCGACCTGAAAAAACATATGAGGACACATAAAGTTATGAATTTTGGAGATCCTTGA
- Protein Sequence
- MCKDKDKLKAHEITHSEERAYSCEICGKRFKRKHSLVEHQKHHTGVKYDCEICQKQFLRQAYLNKHMMIHTGERPYMCSTCGKSFVSSSNLNGHKKSHSEDTPFECDICHRKFKQPKNLREHLRVHTGEKPYLCNVCGKSFAHISYYTVHKKIHLGIYAYPCEICGQKTICKSDLRKHMKTHKVVLNFRKSIIENEEKLRKIVELKVNTFSQAVKTEENVFIKVENDEMFHESIETIVKKNENISDDDVPLVKLKVECDLNETQTIKIPAKKRIFKKERIKMACKTCGKLYKNNEKFKAHEKAHLEKYVCEICGKESKNKRTLVEHKKTHLDVRKYECEVCSKKFSKNFLLQQHKVIHTGERSFICSVCGKSFVSNSNLASHRRSHSEKTPFECEICHKKFKQERNMRTHLRVHTGEKPYLCNVCGKSFAHSSYYIVHKKIHLGIYAYSCEICGQNTICKSDLKKHMRTHKAEINDYLPTKMCKKCEKLLIKLYNFRNFVKENDTKLREIITSKENAIPIIDKIVDTPLEDMSIKTEENIEIKVEKKDINQENIENLVKKEEIISDDDLPLIKIKVECVLNDQPPKKRQKRKKQNYECKICGKLCRNNKILSDHESTHSDKKAFSCDLCNKQFKRKDTLVDHKKYHTDEPKFECDICKKKFLRQSYLKQHTVIHTGERSFICPVCGKSFVSNSNLASHKRSHSEKTPFECEICHKKFKQQGNMKTHLRVHTGEKPYLCNVCGKSFAQSSYYIVHKKIHLGIYAYSCEICGQNTICKSDLKKHMRTHKVMNFGDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00244481;
- 90% Identity
- iTF_00244481;
- 80% Identity
- iTF_00244481;