Bgla030276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:26174934-26182095[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6.8 3.9e+02 2.7 0.0 10 23 2 15 1 15 0.92
2 21 1.1e-05 0.0006 21.0 5.5 1 23 21 43 21 43 0.98
3 21 9.1e-05 0.0052 18.1 0.6 1 23 48 70 48 70 0.98
4 21 1.7e-06 9.7e-05 23.5 1.2 1 23 76 98 76 98 0.98
5 21 7.3e-07 4.1e-05 24.7 2.4 1 23 104 126 104 126 0.98
6 21 0.00012 0.0066 17.7 1.6 1 23 132 154 132 154 0.96
7 21 0.00022 0.013 16.9 2.1 1 23 160 182 160 182 0.98
8 21 0.004 0.23 12.9 0.8 3 23 284 304 282 304 0.95
9 21 6.3e-05 0.0036 18.6 0.7 1 23 308 330 308 330 0.99
10 21 0.00028 0.016 16.5 1.3 1 23 336 358 336 358 0.96
11 21 1.5e-07 8.3e-06 26.9 0.5 1 23 364 386 364 386 0.98
12 21 1.2e-05 0.00066 20.9 3.7 1 23 392 414 392 414 0.98
13 21 2.2e-05 0.0013 20.0 1.5 1 23 420 442 420 442 0.96
14 21 0.00018 0.01 17.1 2.5 1 23 448 470 448 470 0.99
15 21 0.044 2.5 9.7 1.8 1 23 596 618 596 618 0.96
16 21 0.00017 0.0095 17.3 2.8 1 23 624 646 624 646 0.97
17 21 0.0005 0.029 15.8 1.6 1 23 652 674 652 674 0.96
18 21 9.7e-08 5.5e-06 27.4 0.3 1 23 680 702 680 702 0.98
19 21 1.7e-06 9.7e-05 23.5 3.2 1 23 708 730 708 730 0.98
20 21 1.1e-05 0.00061 21.0 0.5 1 23 736 758 736 758 0.96
21 21 0.00018 0.01 17.1 2.5 1 23 764 786 764 786 0.99

Sequence Information

Coding Sequence
ATGTGCAAAGATAAAGATAAGTTAAAAGCGCACGAAATAACTCATTCGGAGGAAAGGGCTTACTCCTGCGAGATATGTGGAAAAAGGTTTAAACGAAAACATTCTTTAGTAGAACATCAAAAACACCACACAGgtgtcaaGTACGACTGTGAGATATGCCAAAAGCAATTTTTACGACAAGCTTACCTAAACAAACATATGATGATTCATACGGGAGAAAGACCGTATATGTGCAGCACGTGCGGAAAGTCATTTGTTTCCTCCTCTAATCTGAACGGTCACAAAAAGTCACATTCGGAAGATACGCCATTTGAATGTGACATCTGTCACAGAAAATTTAAACAGCCAAAAAATTTAAGAGAACACCTTCGAGtccacacaggagaaaaaccgtaTTTATGTAACGTGTGCGGAAAATCATTTGCTCACATATCGTACTATACAGTGCACAAGAAAATTCATCTGGGAATATACGCGTATCCGTGCGAGATTTGTGGACAGAAAACTATTTGTAAAAGTGATCTAAGAAAACATATGAAGACACATAAAGttgttttaaaTTTTCGAAAATCTATAATAGAAAACGAGGAAAAGTTAAGAAAAATTGTTGAATTAAAGGTAAATACATTTTCACAAGCTGTAAAAACTGAAGAAAATGTATTTATCAAAGTAGAAAATGATGAAATGTTTCACGAAAGTATTGAGACCatagtgaaaaaaaatgaaaacatttctgATGATGATGTACCACTTGTGAAACTAAAAGTAGAATGCGATTTAAATGAAACACAGACTATAAAAATACCTGCAAAAAaacgaatatttaaaaaagaaaggaTAAAAATGGCATGCAAGACTTGTGGAAAGCTATACAAGAACAATGAGAAATTTAAAGCACATGAAAAAGCTCATTTGGAAAAATATGTCTGTGAAATATGCGGAAAggaatcaaaaaataaaagaactttGGTGGAACATAAAAAAACCCACTTAGatgTACGAAAATACGAATGCGAAGTATGCAGCAAAAAATTTTCGAAGAATTTTCTACTCCAGCAACACAAAGTAATCCACACAGGGGAAAGATCATTCATATGCTCTGTGTGTGGTAAATCCTTTGTCTCAAACTCAAATTTGGCCAGTCATAGAAGATCACATTCAGAAAAAACACCTTTTGAATGTGAGATCTGccacaaaaaattcaaacaagAAAGAAATATGAGAACCCACCTTCGGGTTCATACCGGGGAAAAACCATATTTGTGTAACGTGTGCGGAAAGTCGTTTGCGCATAGTTCCTATTACATAGTGCACAAGAAAATCCATCTGGGCATATATGCGTATTCGTGCGAAATTTGCGGACAAAACACCATTTGCAAGAGCGACCTGAAAAAACATATGAGGACACATAAAGCTGAAATAAACGATTATTTACCAAccaaaatgtgtaaaaaatgcgaaaaactgttgataaaactttacaattttcGTAACTTTGTCAAAGAAAATGATACAAAGTTAAGAGAAATAATTACTTCAAAAGAAAACGCCATTCCCATTATCGATAAAATTGTTGATACTCCTTTGGAAGATATGTCAATAAAAACTGAAGAAAATATAGAAATTAAAGTAGAGAAGAAAGATATAAATCAGGAAAACATTGAAAACTTggtgaaaaaagaagaaatcaTTTCAGATGATGATCTACCTCTGATAAAGATAAAAGTTGAATGTGTTTTAAATGATCAGCCACCCAAGAAAaggcaaaaaagaaaaaaacagaaTTACGAGTGTAAAATATGTGGAAAACTTTGtaggaataataaaatattatctgaCCATGAGTCTACTCATTCTGATAAAAAAGCATTCAGCTGTGATTTATGCAACAAACAATTTAAGAGGAAAGATACTTTAGTGgaccataaaaaatatcatacagatgaacCAAAATTCGAGTGtgatatatgcaaaaaaaaattcttacgaCAATCCTACCTGAAGCAGCACACAGTAATCCACACAGGGGAAAGATCATTTATATGCCCTGTGTGTGGTAAATCCTTTGTCTCAAACTCAAATTTGGCCAGTCATAAAAGATCACATTCAGAAAAAACACCTTTTGAATGCGAAATCTGccacaaaaaattcaaacaacAAGGAAACATGAAAACGCACCTACGGGTTCATACAGGGGAAAAACCATATTTGTGTAACGTGTGCGGAAAGTCGTTTGCGCAAAGTTCCTATTACATAGTGCACAAGAAAATCCATCTTGGGATATATGCGTATTCTTGCGAAATTTGCGGACAAAACACCATTTGCAAGAGCGACCTGAAAAAACATATGAGGACACATAAAGTTATGAATTTTGGAGATCCTTGA
Protein Sequence
MCKDKDKLKAHEITHSEERAYSCEICGKRFKRKHSLVEHQKHHTGVKYDCEICQKQFLRQAYLNKHMMIHTGERPYMCSTCGKSFVSSSNLNGHKKSHSEDTPFECDICHRKFKQPKNLREHLRVHTGEKPYLCNVCGKSFAHISYYTVHKKIHLGIYAYPCEICGQKTICKSDLRKHMKTHKVVLNFRKSIIENEEKLRKIVELKVNTFSQAVKTEENVFIKVENDEMFHESIETIVKKNENISDDDVPLVKLKVECDLNETQTIKIPAKKRIFKKERIKMACKTCGKLYKNNEKFKAHEKAHLEKYVCEICGKESKNKRTLVEHKKTHLDVRKYECEVCSKKFSKNFLLQQHKVIHTGERSFICSVCGKSFVSNSNLASHRRSHSEKTPFECEICHKKFKQERNMRTHLRVHTGEKPYLCNVCGKSFAHSSYYIVHKKIHLGIYAYSCEICGQNTICKSDLKKHMRTHKAEINDYLPTKMCKKCEKLLIKLYNFRNFVKENDTKLREIITSKENAIPIIDKIVDTPLEDMSIKTEENIEIKVEKKDINQENIENLVKKEEIISDDDLPLIKIKVECVLNDQPPKKRQKRKKQNYECKICGKLCRNNKILSDHESTHSDKKAFSCDLCNKQFKRKDTLVDHKKYHTDEPKFECDICKKKFLRQSYLKQHTVIHTGERSFICPVCGKSFVSNSNLASHKRSHSEKTPFECEICHKKFKQQGNMKTHLRVHTGEKPYLCNVCGKSFAQSSYYIVHKKIHLGIYAYSCEICGQNTICKSDLKKHMRTHKVMNFGDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00245054;
90% Identity
iTF_00245054;
80% Identity
iTF_00245054;