Bput023875.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- Trl
- Assembly
- GCA_907164805.1
- Location
- OU015464.1:8136490-8138101[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-17 1.5e-13 51.5 0.1 20 50 12 42 6 44 0.93 2 3 1 7.1e+03 -1.8 0.1 13 23 54 64 51 72 0.71 3 3 5 3.5e+04 -6.1 6.7 10 26 90 107 74 110 0.66
Sequence Information
- Coding Sequence
- ATGGAATGTTATCAAGATTCAAAGCTGTCCAACAATTCCGATCAACCCGTCACGTGTCCGATTTGTAATATTACCCTCCGTCAGTCTCGAAACCTACGGCGCCATCTTGAACTCCTCCATTTCGGAGCAGGCCAATCAAAACTGAAAATCAAGTCGTCTCGAAAGAAACGTTCGCGGAAGGAATCGACTACAACGATCACCTCTCAGCCTTCTCCTTCTCACTCTGTACCTTCTCAATCGTGTACGTCTCAACCGTGTACACCCCAACCGTCGACTCCTCAACCTTCGACTTCCCAGTCTTCTACTCCTCAGCCTTCTACCTCTCACTCTGCACCCTCTCATACGGTACCTGCCTTCCCTCAACATGCTCCACCGATTTCAGGATACCAGAATCATCCAAATTCAGCAATACCAGAATTTCCCGGTCTCTCTAACCTCACACCTTTGGTCCCCATGTCTGTGAATCATTTGTCTCATAGTATGATGGGACACCCACAGATGTCATCACAGTACAGAGGGCTACCACCTATGGTTGCGCCGCACGACGGTCTCTATAGACACCACACGGAGCCGTATGAGCATTTCAGCCAGACGAGTAGATATCGCGTTCCATAA
- Protein Sequence
- MECYQDSKLSNNSDQPVTCPICNITLRQSRNLRRHLELLHFGAGQSKLKIKSSRKKRSRKESTTTITSQPSPSHSVPSQSCTSQPCTPQPSTPQPSTSQSSTPQPSTSHSAPSHTVPAFPQHAPPISGYQNHPNSAIPEFPGLSNLTPLVPMSVNHLSHSMMGHPQMSSQYRGLPPMVAPHDGLYRHHTEPYEHFSQTSRYRVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243880;
- 90% Identity
- iTF_00243880;
- 80% Identity
- -