Blap009130.1
Basic Information
- Insect
- Brachypalpus laphriformis
- Gene Symbol
- Aef1
- Assembly
- GCA_945910015.1
- Location
- CAMDTZ010000260.1:607793-608572[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.001 24 7.1 0.4 20 48 130 158 117 162 0.78 2 4 1.9e-05 0.44 12.6 0.0 21 50 159 188 155 190 0.87 3 4 0.0049 1.2e+02 4.9 0.1 21 51 187 217 185 218 0.87 4 4 0.00013 3 9.9 0.1 21 47 215 241 213 246 0.89
Sequence Information
- Coding Sequence
- ATGCAGCGGCTGTTGCCTCACAAATTAAACGAAACGTGCACTACTTCTTCTATCTCTCAGTCAAAATCTGAACCCGAACACCACACTCCAAGCGAACACACACACACTGAAAATTGCTCCCCTCGCCATCTTTCCTACACAATGACTAATTGTGAAATCGTTATTGTTGCCACAACCGATGAACCAGCCACAGATTTGCAAATACCCTTTAACGTGATAACCTCAGCGGCAACAGTATCAGCGGCTGGTCCCACTACTACGACACATCACCTCGCTCCATTGCAACAACAGCATACCGAACAGCAGCAGCTGCTGCAGCCAGAAAGTATCCAACAACAAGTGCAAACAGGAGCACTACCGCCACATTTGGACCGTCCGCCGACAAACGGTCCCGAGAAGCCATTCCAATGCAATATATGTGAGCGAAGATTTCGACAGCTCAGCACACTAACGAATCACGTAAAAATTCATACCGGCGAGAAACCCTACAAATGCACGATCTGCGACAAAACCTTCCGACAATCGAGCACCCTTACGAACCATATGAAAATCCATACCGGCGAGAAACCCTTCATCTGCTCATACTGTCCCAAGCAGTTCCGCCAGCTGAGCACGCTAACGAATCACCTGAAAATCCATACCGGGGAGAAGCCGTTCGAATGTGCCGTTTGCAAAAAACAATTCCGCCAATCGAGTACGCTCAACAATCACATAAAGATCCACGTCATGGACAAGGTATACATACCAGTAAAAATCAAAACCGAGGAGGACGAAGGATGA
- Protein Sequence
- MQRLLPHKLNETCTTSSISQSKSEPEHHTPSEHTHTENCSPRHLSYTMTNCEIVIVATTDEPATDLQIPFNVITSAATVSAAGPTTTTHHLAPLQQQHTEQQQLLQPESIQQQVQTGALPPHLDRPPTNGPEKPFQCNICERRFRQLSTLTNHVKIHTGEKPYKCTICDKTFRQSSTLTNHMKIHTGEKPFICSYCPKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYIPVKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223723;
- 90% Identity
- iTF_00672533;
- 80% Identity
- iTF_00241707;