Bneb019439.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- PRDM15
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:54213842-54219432[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0027 6.9 8.3 0.0 21 49 245 273 242 277 0.93 2 7 0.098 2.5e+02 3.3 0.2 26 44 286 304 281 307 0.90 3 7 0.22 5.7e+02 2.1 0.1 21 42 419 443 409 452 0.71 4 7 0.00014 0.36 12.4 0.0 21 50 552 581 550 584 0.92 5 7 0.085 2.2e+02 3.5 0.2 26 44 593 611 588 614 0.89 6 7 0.32 8.2e+02 1.6 0.2 21 45 726 750 715 759 0.77 7 7 2.5 6.4e+03 -1.2 0.0 22 48 783 809 776 812 0.83
Sequence Information
- Coding Sequence
- atggaTATAAAAGATTCAATAAGtattaattttgacaatatttgtcGCACGTGCTCTTTAGAGGGTGAAATGAAATCATTATTTGACACTGTAATTTTTACAGAACATTCTTTACACTCATTACGAATTGTGGACATGCTAATGGCAATCACTACTGTACAAgtatccGAAGAAGATAATTTACCAGTAAATATGTGTATGCCTtgtttaaataaacttttgaaagCGTATTTGTTTAAATTGCAATGTGAagatgttaatttaaaattagctgattttttttataattttaataaaaacgaaGATGTAGATGAATCTGAAAAAATCGAGAACTTACTTGAAGATAAAACTGATAATTTGTctacaatagaaaatattaaagtagaagaaaatgatattaaaaataaaccgcAAGTCAAAAAGAGTAGAAaaaaaagggtgaaaaatccaAATACTGTAACCCCAACGACAAAATATTGCAATTTATGTAATAAACAGATATCTGTGTACTTTTATGGTAAACATCTTAAATTGTGCCACAATAAAAATCTTATAGACCCAGCAAAACGGCCTAAAAAGAAACTATGCCAAATTTGCAACAGATCTTATGAGCCGTCATACTACCGTAAACATATCCGTATACATGAAGGTGATAAACGCTACAAATGTCCCCACTGCGGTAAATGTTTCGGTCACAAAAATGTGTTAGTCGGTCATATAAAAATTCATACTGGCGAAAAACCGTATGTGTGCGATATTTGTGGAAAAATGTTCCGCAAATTATGGAATCTACATGTACACAAGAAAAAACAACACTTTGGAGTGGATCCACTTAATCCGAAAACCGAAGTCCACCAGTGTTCAATATGTAACGCTGAATTTAGTCGTAAATCAGCCCTACGTCGCCATATGATCAGTCACGATAATGTCGTGTTCCCGTGTGATATATGTTCAAAAAAGTTCTTCACTTCCGAAAGATTAGAAATTCATCGCACGAAACATTTGACGGGGAAACCTTTCTATTGTCTGTTTTGTGACGAAACCTTTGAAACGctagaaatgaaaaaaaaccacGAAATAactcattcagataaaatttatcTATGCAATTACTGCGGCAAAAGTTTCGTCAGAAAATATTACTTCGATATTCACCTACGAACACATACCGGGGAAACCCCGTACAAATGTCGATTTTGTCGGAAGCCGTTTAAACGAACATCGACAATGAAAGCGCACGAGATGATTCATACCGGTGAGAAACCGTACACGTGTGAATATTGCCACAAGAAGTTTCGCTTGATCAACCAGTTGGATAATCATCGGCGCACGCATACTGGTAGTAAACCGTTCGTTTGTTCCGTTTGCGGCAAAGCGTTCGCTATGAAGGTCAATTTAACTGTGCATTTTCGTATACATTCGGGAGAAACGCCATTTGTTTGTTCGTACTGTGATAAAGGGTTTTACGATTCGAGCAACCCAGCAAAACGGCCAAAAAAGAAACTATGCCAAATCTGCAACAGATCTTATTATCCGTCATACTACCTTAAACATATCCGTATACATGAAGGTGATAAACGCTACAAATGTACTCACTGCGGTAAATGTTTCGGTCACAGAAATGTGTTAGTCGGTCATATAAAAATTCATACTGGCGAAAAACCATATGTGTGCgatatttgtggaaaaacgTTCCGTAAATCGTGGAATCTACatgtacatacaaaaaaacaacACTTTGGAGCGGATCCACTTAATCCGAAAACCGAAACCCACCAGTGTTCAATATGTAACGCTGAATTTAGTCGTAAATCAGCCCTACGTCGCCATATGATCAGTCACGATAATGTCGTGTTCCCGTGTGATATATGTTCGAAAAAGTTCTTCACTTCCGAAAGATTAGAAATTCATCGTACGAAACATTTGACGGGGAAACCTTTCGATTGTCTTTTTTGTGACGAAACATTTGAAACGctagaaatgaaaaaaaaccacGAAATAACTCATTCAGATAAGATTTATCTATGCAATTACTGCGGCAAGAGTTTCGTCAGAAAATTTTACCTCGATAGTCACCTACGAACACATACCGGGGAAACCCCGTACAAATGTCGATTTTGTCGGAAGCCGTTTAAGCAAACATCGTCAATGAAAGCGCACGAGAGGATTCATACCGGTGAGAAACCGTACACGTGTGAATATTGCCACAAGAAGTTTCGCTTGGTCAACCATTTGGATAATCATCGGCGCACGCATACTGGTAGTAAACCGTTCGTTTGTTCCGTTTGCGGCAAAGCGTTCGCTATGAAGGTCAATTTAACTGTGCATTTTCGTATACATTCGGGAGAAACGCCATTTGTTTGTTCGTACTGTGATAAAGGGTTTTACGATTCGAGCAGTATGAAAAAACATAAACGGATCCATCATAGTCCGAATGTTACTAATtgtgaaaaaatcgaaaaataa
- Protein Sequence
- MDIKDSISINFDNICRTCSLEGEMKSLFDTVIFTEHSLHSLRIVDMLMAITTVQVSEEDNLPVNMCMPCLNKLLKAYLFKLQCEDVNLKLADFFYNFNKNEDVDESEKIENLLEDKTDNLSTIENIKVEENDIKNKPQVKKSRKKRVKNPNTVTPTTKYCNLCNKQISVYFYGKHLKLCHNKNLIDPAKRPKKKLCQICNRSYEPSYYRKHIRIHEGDKRYKCPHCGKCFGHKNVLVGHIKIHTGEKPYVCDICGKMFRKLWNLHVHKKKQHFGVDPLNPKTEVHQCSICNAEFSRKSALRRHMISHDNVVFPCDICSKKFFTSERLEIHRTKHLTGKPFYCLFCDETFETLEMKKNHEITHSDKIYLCNYCGKSFVRKYYFDIHLRTHTGETPYKCRFCRKPFKRTSTMKAHEMIHTGEKPYTCEYCHKKFRLINQLDNHRRTHTGSKPFVCSVCGKAFAMKVNLTVHFRIHSGETPFVCSYCDKGFYDSSNPAKRPKKKLCQICNRSYYPSYYLKHIRIHEGDKRYKCTHCGKCFGHRNVLVGHIKIHTGEKPYVCDICGKTFRKSWNLHVHTKKQHFGADPLNPKTETHQCSICNAEFSRKSALRRHMISHDNVVFPCDICSKKFFTSERLEIHRTKHLTGKPFDCLFCDETFETLEMKKNHEITHSDKIYLCNYCGKSFVRKFYLDSHLRTHTGETPYKCRFCRKPFKQTSSMKAHERIHTGEKPYTCEYCHKKFRLVNHLDNHRRTHTGSKPFVCSVCGKAFAMKVNLTVHFRIHSGETPFVCSYCDKGFYDSSSMKKHKRIHHSPNVTNCEKIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239490;
- 90% Identity
- iTF_00239490;
- 80% Identity
- iTF_00239490;